RNA id: TU98958


Basic Information

Item Value
RNA id TU98958
length 3081
RNA type TUCP
GC content 0.36
exon number 5
gene id AMCG00010271
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21964529 ~ 21982050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACGATGTAAGACGAGAGAGCTGGATGTTTCGCTCAGTGGCTTTTTTTGAAGGTCAGAAAGGTGCTTTTTGAGCAACACCTGAAAAGTCTCAATCACTTCCTGTGTCTGTAGTGAAAGTGACACACGGACGGAGCGCTGGCATTCGGCAGCTTTGATCAATCGGCTGCTGCGTGTCTTTGATCTTTACAAGATACATaaagaaaactgaagaaaaacacgATATTCGGTAGACTTCTGGATTTAAGGACTGTGGACATGTTAAAGCATCGTAAATTCTTGTTTGTTATAATAGCAGATGCAAATCTCACCGAGGCTGAAAAATGGAGTGGCCACTTTTCTAAGTGTCCAAAGGAATACACGCATTACTGCATTAATGGGATGTGCCGCTACGTGAAGGAAGAACAGCAGCCAGCATGCATatgtGAACATGGATATACTGGATCTAGATGCGAAATGCGAGTTTTCTTTTATATAGGTGAACGAAAGCAGATCATAATTATCTGTGTGATTACAGCATTGGTATTTGTGTTACTTCTCATCATTTTTATATGCATCTGTGTACATCGACGTAAGCTGTGTCATAAACGGAGAAAGAGGAAAGAAGACAAATCTGgagaaattgaaaaattgaaCACAATCCCAACTGAAGAGAAAGACAGCTTAGCTGTGAATGTGGAATCTTCAGAAACCAATTCAGTTTGATAAGACAAGGAGTATGCAAGGAAGACACCTGCTGGCCAGAAGTATTAGCTGTGGAAAGTGACTAAACAACAGCATCGGTCTAGCATTGCTAGTCTTCTGTAGAGAACAATGTATCCTTTATCCTGCTTTGAGATGATACAATGACACATTATCCATATTTCACTGGATAGAACAACTTAATTTGATTTAGAGCTATCTTTATTATTGCAAGACACCTGGGCTGTCATTTGGGTGGGGCAGGATGTTGTCGAATAGGGCAGCTGCCCCCCAATGAGCTCACTCAAGGCCCTAATGGCGATGTAGAGTGAAAAATAGGAAGACTTTAAGGACAAAGGGGCttacaaatgttttgttcacTGCACCCACACTCCTAAGTGTTTTTGTAAAGTTCCTGAGTGACACGCATGATATGACTGGGTGGCACAAATATCATTTAGCCACCAGAACTCCTAACCCACTCCCCCCAGCACCTGTGGCATTCAAGGTGAACCTCCTTTTGCCttcacacactaacacaccaACCCCCATTTAGTGAAATTATGCCTCTGCAAAACActactttaatttttttaacttagTCCTAATACATAcgtcatttattttacttatattgaGTAGACTGGACCAACACCTTGGAATTTGTACACATCAAGTGGTTGGGACACTAATGACAATGGCTGTAATCTGTTGAAATCAAAAGTAGTTTGATAGTAATAAATTGGCAATGtggactttgttttaattaatctctttaCTTAAATGTCTTGAGCTTGACAAAGGACACTTCTGGAATCTAAGAATAGGAAAATAGTGATACCCTTTTGCAGTAATATACTGTGGAGCTTAAGAGTTACTGAGAGCAGTAACAAACTGTTTCAATAGTTTGAATAATTTGCAGGTCATATTTGGCCGACTTGTGCAGTTTACCTctgtgaaaaatatgtattttatggttttattttgcattatttgtatttattacgtTTGTGTCTCAGTTGTACATTATGTATGGTGTATGTTTATCAGTCTTGAGTCTGATGGTAGCTGCTTTAATCACCTGTTGCTGTCCAATGATCTAGACCACATTCCttttcaattgaaaaatattgtaaaattgtaCTTCCATGTAAGAACTCAAGACCTTGATGCAAAATAATTAGTGCATGTGttccattaaaacaatctgtaaGCAAAGTTCCATAGaccattatttaaacattgatcAGTTctattatttacatgtttaaaggTATAGGTTACCATGAagttatatgttttaaatgtaaaaaaacaattgtatcaCACCATAATCAAGGCTAGGTATTGGGGTGCTATACTATAgggtttaaattaacattacattaaaaagattACACTAGTTCCCAGTTTGATGATAAGCCTTGATGGTGGtcttagtgttttttgtttgcaggtTGTTTTGGTGTCTTTTGAAGTTCTCTAGGAAGAGTTCCCAATTCATTACTATGGATTGTATGGATTTCTCATCACTGTAACAGCACACACGTACTCACGATCTCTGTAATAATTGTTGTAGTTCCTCAGGTTTGGTACTATATGAGTAAATATGTAAGATGCTCAGcatattatatacatgttttttcttcttgcgGTGTAATTCCTACTTCCATTTCACTCAATGTTAAGCTGTACAAAGGGAAGTAATGAGGGGTGGTGATGGATAACTGTTCTCAGATCCCTTTCATAAAGTATAAAGTTACCTGAATTATACTCTATAATAAGCTAGTGACTAGGTTATTCTTCTACGTGGCTTTAATCCAGTTATGCATTTTGACTTCAGTTATAAATATTGCtcactttcacattttattctgGGTCTTCTGAAGTGTGCTGCTGTCTTATGCTACTGGgagccaataataataaactcttattagaaacaaaagtatttaaatcgATGGGAGAAGTTCTTCTTCTTTGgagtaataaatgtaatttagaaacGTTTGATGTTCATTTACTTGTAACGGGTTAATTTACTCTAAAATAAGTATGTTTCAAGAATGTGCAAGACTAAAAGTGCACCATAAGCAATAATGTATGCTCTTACTAATGctcttatttaaattttaacacATACATGGAAATTGCAATATTCTAAATTTTTTCTTTATGAAATCGaataaaaggaaggaaagagagaCGTTTCTGAGTGTCTCAAAAGCGtagagcaaaataaatcaactgtATGCTTTTAGTGCAATAACATGTAAAACTGTAATTCAATTTGATTccaaaataaagttatttatgttgtgtttatattgatgttttttatttttattttatttaacacttgtaattgtatttatgctAGTTGGCATTGCTTAAATTCCTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98925 lncRNA downstream 178828 21785446 ~ 21785701 (-) True G79324
TU98923 lncRNA downstream 208018 21755508 ~ 21756511 (-) True G79322
TU98908 lncRNA downstream 218299 21704729 ~ 21746230 (-) True G79309
TU98899 lncRNA downstream 308481 21649128 ~ 21656048 (-) True G79306
TU98898 lncRNA downstream 316192 21647920 ~ 21648337 (-) True G79305
TU98976 lncRNA upstream 34743 22016717 ~ 22017937 (-) True G79368
TU98975 lncRNA upstream 36874 22018848 ~ 22021016 (-) True G79367
TU98980 lncRNA upstream 47630 22029604 ~ 22029955 (-) True G79372
TU99015 lncRNA upstream 94572 22076546 ~ 22076856 (-) True G79403
TU99016 lncRNA upstream 97229 22079203 ~ 22079441 (-) True G79404
AMCG00010263 mRNA downstream 191992 21757180 ~ 21772537 (-) True AMCG00010263
AMCG00010264 mRNA downstream 283163 21661590 ~ 21681366 (-) True AMCG00010264
AMCG00010265 mRNA downstream 372971 21590968 ~ 21591558 (-) True AMCG00010265
AMCG00010262 mRNA downstream 392017 21541475 ~ 21572512 (-) True AMCG00010262
AMCG00010246 mRNA downstream 791149 21124002 ~ 21173380 (-) True AMCG00010246
AMCG00010267 mRNA upstream 25440 22007414 ~ 22011792 (-) True AMCG00010267
AMCG00010270 mRNA upstream 49020 22030994 ~ 22043479 (-) True AMCG00010270
AMCG00010269 mRNA upstream 68023 22049997 ~ 22064355 (-) True AMCG00010269
AMCG00010268 mRNA upstream 87152 22069126 ~ 22076083 (-) True AMCG00010268
AMCG00010273 mRNA upstream 368426 22350400 ~ 22354352 (-) True AMCG00010273
TU98765 other downstream 882704 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 1023136 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 4018768 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 4108799 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 4120140 17840992 ~ 17844389 (-) False AMCG00010188
TU99198 other upstream 1100872 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 1377669 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 4390768 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 9972410 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 11013476 32995450 ~ 32999999 (-) False AMCG00010509

Expression Profile