RNA id: AMCG00010263


Basic Information

Item Value
RNA id AMCG00010263
length 1597
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00010263
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21757180 ~ 21772537 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTGCTCCTCCTCTCAAACCACACAAGTTTTCCCAACTTGAAACAAGACATCGCCCAGTGAAGCTGGAGCTGTGGAGCTGCTTTCACATCGGGGAACATGTTTAAGATCTCCTCTCGAATGAAGTCCCCTTGCTGGGCTTGGAGGAAACATCCTGCCAGCGCCTTCAACTCCTTAGTTAACTTCTACCGGTCCAGCGGTGCATTATGTGAGCAGTCTGTAATAAATAACTCACCACCAAATATCTTGGAAATGCCTCCATGTAGCTTTAAACCTAAGGAGTATAAGGAGATGTCTAGAGAACGAATGATGGAGATACGGAATCTCAATTGCAGTCCAATGATCAATAAGGTTACCTATTACAAGAGCCCTTTATATGTCCACCAAGGCTATATGCAGTGGCTATGGGATACAAGCGGCCAGCGATACCTTGACCTATTTGCAGGTGTAGCCACAGTCAGCGTTGGACACTGTCACCCGAAGGTGAGAGCTGCAGCCGAGAGACAAATGGGACATCTTTGGCACACAACGCACATCTATGTGCATTCTCCAATCCACGAGTATTCAGAAAAACTTGCAGCCCTTTTCCCAGATCCACTGAAGGTTGTTTACTTTACAAACAGTGGTTCTGAGTCTAATGACCTTGCTATGCTCATGGCACGGCTGCACACAGGAAACTTTGACATCATGACCTTAAGACTATATGTCCTGATGTTTTCCGAGGTCCTTGGGGTGGAAGCCACTGCCGAGATTCTCCTGTCCAGACCATTCGAGATTGTAACTGCTCCCCAGGGGGTTGGTGGCGCTGTGCAGTATCCAAAGGACTTCCTGAAGCAGGCCTACAACCTCATCAGGGAAAAAGGAGGGGTCTGCATTGCTGATGAGGTTCAGACAGGATTTGGCCGTACAGGAAGTGACTTCTGGGGATTTACAGCTCATGATGTTGTTCCAGATATTGTTACCTTGGCAAAGGGCATTGCAAATGGATTCCCTATGGGAGCTGTTGTTACCACACCAGAGATTGCCAGGTCATTTGCTAAAGGGTTACACTTCAACACCTTTGGAGGGAGTCCACTTGCCTGTGCGATTGCATCTTCAGTGCTTGATacTATTGAACAGGATAAGACACAGCAAAACAGTGCAACCCTTGGCACGTATTTCCTAACTGAACTGGCTCACCTAAGGGATAAATATGAGATCATTGGTGATGTACGTGGAAAGGGACTACAGATTGGGGTGGAAATGGTTAAGGACAAAGTAAGCCGTGACCCCCTGCCTGTAGCAGAGGTGAACCAGATTTTTGAAGACTGCAAAGAAATGGGCCTATTGATTGGAAAAGGGGGACTTTATGGACAGACATTCCGGATAAAGCCCCCTATGTGCATCACTAAAGAAGATGTTGACTTTGCGCTGTCAGTCTTCAGCCATGCCGTGCAAAAGCAAATGGAGAGAAGATAGTGGTATTCGGGCAAGTCTTATCATCTCATATTAAGAAGGAAGAGTTAGCCCATACATTACATAGAAGAGATGTACTGTATGAATTGTGTAACTCAAGGCTCACATCTCTTATCTACCACACCTTCAAAGGttctcgggg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function

KEGG:

id description
K00827 AGXT2; alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98923 lncRNA downstream 669 21755508 ~ 21756511 (-) True G79322
TU98908 lncRNA downstream 10950 21704729 ~ 21746230 (-) True G79309
TU98899 lncRNA downstream 101132 21649128 ~ 21656048 (-) True G79306
TU98898 lncRNA downstream 108843 21647920 ~ 21648337 (-) True G79305
TU98897 lncRNA downstream 109469 21647425 ~ 21647711 (-) True G79304
TU98925 lncRNA upstream 12909 21785446 ~ 21785701 (-) True G79324
TU98976 lncRNA upstream 244180 22016717 ~ 22017937 (-) True G79368
TU98975 lncRNA upstream 246311 22018848 ~ 22021016 (-) True G79367
TU98980 lncRNA upstream 257067 22029604 ~ 22029955 (-) True G79372
TU99015 lncRNA upstream 304009 22076546 ~ 22076856 (-) True G79403
AMCG00010264 mRNA downstream 75814 21661590 ~ 21681366 (-) True AMCG00010264
AMCG00010265 mRNA downstream 165622 21590968 ~ 21591558 (-) True AMCG00010265
AMCG00010262 mRNA downstream 184668 21541475 ~ 21572512 (-) True AMCG00010262
AMCG00010246 mRNA downstream 583800 21124002 ~ 21173380 (-) True AMCG00010246
AMCG00010247 mRNA downstream 678789 21053624 ~ 21078391 (-) True AMCG00010247
AMCG00010271 mRNA upstream 193789 21966326 ~ 21982050 (-) False AMCG00010271
AMCG00010267 mRNA upstream 234877 22007414 ~ 22011792 (-) True AMCG00010267
AMCG00010270 mRNA upstream 258457 22030994 ~ 22043479 (-) True AMCG00010270
AMCG00010269 mRNA upstream 277460 22049997 ~ 22064355 (-) True AMCG00010269
AMCG00010268 mRNA upstream 296589 22069126 ~ 22076083 (-) True AMCG00010268
TU98765 other downstream 675355 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 815787 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 3811419 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 3901450 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 3912791 17840992 ~ 17844389 (-) False AMCG00010188
TU98958 other upstream 191992 21964529 ~ 21981974 (-) True AMCG00010271
TU99198 other upstream 1310309 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 1587106 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 4600205 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 10181847 31954384 ~ 31971755 (-) True AMCG00010487

Expression Profile