RNA id: TU99198


Basic Information

Item Value
RNA id TU99198
length 449
RNA type TUCP
GC content 0.44
exon number 4
gene id AMCG00010288
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23082655 ~ 23086345 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTCAATCCCATCATTCCTACAATCCTCGCGCACCGTTCGCTGCCGGAAAGCATCAAGATGGTTCCTCCAGTGCAGGTCTCGCCGCTCATTAAGACGGCCAGGTGGTCAGCTTTGCTTGTTGGAATGATCTATGGCAAGAAGAGATATGACTATCTGAAGCCCATtgcagaggaggagaggagggttGAGGCGGAGGAGAAAGTGGCCCGTGAAGAGGCAGAGCGCATCGCGAGACAGCTGGCAGAAGCCAGTGATGACTCCATCCTGAAATGAACTGTGCTTAGAAATGTTTCTTTCAATGAAGAAATTGGCTCTGTACATCTGTCTTTGTAGAAATGCttgtatttcttaaatgttctttatttgtaaaataagacttaaaaataaaactgatctaTGAGATTTGGTTTAGTAGTAAGTCCATAGATCTGGATCATCTTCAAAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99134 lncRNA downstream 347406 22734995 ~ 22735440 (-) True G79483
TU99106 lncRNA downstream 387887 22681665 ~ 22694959 (-) True G79466
TU99051 lncRNA downstream 699716 22380734 ~ 22383130 (-) True G79430
TU99042 lncRNA downstream 774526 22308118 ~ 22308320 (-) True G79424
TU99019 lncRNA downstream 984058 22096838 ~ 22098788 (-) True G79407
TU99199 lncRNA upstream 10617 23096602 ~ 23097308 (-) True G79541
TU99200 lncRNA upstream 22868 23108853 ~ 23109092 (-) True G79542
TU99206 lncRNA upstream 55400 23141385 ~ 23145055 (-) False G79548
TU99207 lncRNA upstream 55400 23141385 ~ 23147069 (-) True G79548
TU99264 lncRNA upstream 241003 23326988 ~ 23327361 (-) True G79594
AMCG00010285 mRNA downstream 35405 23044054 ~ 23047441 (-) True AMCG00010285
AMCG00010284 mRNA downstream 77400 23003015 ~ 23005446 (-) True AMCG00010284
AMCG00010286 mRNA downstream 86405 22987407 ~ 22996441 (-) True AMCG00010286
AMCG00010287 mRNA downstream 213395 22859678 ~ 22869451 (-) True AMCG00010287
AMCG00010280 mRNA downstream 374457 22699738 ~ 22708389 (-) True AMCG00010280
AMCG00010289 mRNA upstream 18875 23104860 ~ 23105966 (-) True AMCG00010289
AMCG00010294 mRNA upstream 78982 23164967 ~ 23168709 (-) True AMCG00010294
AMCG00010296 mRNA upstream 89789 23175774 ~ 23201168 (-) True AMCG00010296
AMCG00010295 mRNA upstream 127295 23213280 ~ 23229997 (-) True AMCG00010295
AMCG00010303 mRNA upstream 292375 23378360 ~ 23385105 (-) True AMCG00010303
TU98958 other downstream 1100872 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 2001021 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 2141453 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 5137085 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 5227116 17852867 ~ 17855730 (-) False AMCG00010190
TU99273 other upstream 273658 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 3286757 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 8868399 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 9909465 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 12628966 35714951 ~ 35716672 (-) True G81716

Expression Profile