RNA id: AMCG00010284


Basic Information

Item Value
RNA id AMCG00010284
length 2106
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00010284
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23003015 ~ 23005446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGAGAGCACCAGAGAAACATCCTCCATCTGCAGAGGAAGGTGCGCAGGCGGAGGGACCCGAAGGAAGTGCTGACCAACAAGCTGAGCAGAAGTCTCTCCTGCTCGGTGACCAAGCTGAAAAACACCTTCACTGGCTTCTTTCCTGTGGTTCGGTGGTTGCCGAAGTACAAATTTAAGGAGTATATCTGGGGTGACATCATGTCAGGCCTCATCGTGGGGATTATCCTTGTTCCCCAGGCCATCGCCTACTGCCTGCTGGCTGGGCTTCAGCCTATCTATGGCCTGTACACTTCCTTTTTCagcaacattatatattttttcatgggCACCTCCCGGCATGTCTCTGTGGGGATATTCAGCCTGATGAGCCTCATGGTTGGACAGGTGGTGGACCGGGAGGTCTATCTGGCAGGGTTTGACCTGAGCGAGGACACCAACGTAGACACCATGCAATTAGGAGACATATGGAACAGCACTGTCTCCTCCAGCATCTCCACAGTGAACTTGAGCATGGGGGGGTTAAGTATGGAATGTGGGAAGGAGTGCTATGCCATTACCATTGCTGCTGCTTTGACATTCCTAGCTGGTATTTATCAGCTGGGATTTGTCTCAGTGTACCTGTCTGCGCCAATGCTGGATGGCTTTGCCACAGGTGCCTCCATCACCATTCTCACTGTGCAGGCCAAGTACCTTCTCGGGCTCAAGATACCTCGGCACCAGGGCTATGGGACTGTCATCATCACATGGATCAACATCTTCAAGAATATCCACAAGACGAACTTCTGTGACCTGATTACCAGCACCATCTGCTTGGCAGTGCTGGTGGCTGCCAAGGAGTTAGGCGACCGCTACAAGGATCGGCTGAAGATCCCTTTACCCACAGAGCTGGTGGTGGTGACAGTGGCAACCCTGGTTTCCCACTTTGCTAACCTCAATGGATTGTACAGCTCCAGTATCTCTGGGGCAATTCCAACGGGATTCATTCCCCCAAAGGTGCCTAGTTTTGAGCTGATGCCAAGGGTAGTGTTTGATGCCATACCCCTTGGTATCATCAGCTTTGCCTTCACAGTTTCACTCTCTGAGAtgtttgccaagaagaatggctATACTGTTCGGCCCAATCAAGAGATGATCGCTATCGGCTTCTGTAATATCATACCATCCTTTTTCCATTGCTTCACGACCAGTGCAGCCTTGGCCAAAACAATGGTGAAAGACTCAACCGGCTGCCAAACACAGGTTTCCAGTGTGATCAGCGCCTTTGTTGTCCTGCTGGTCCTCCTGGTCTTTGCCCCACTTTTTTACTCCCTACAGAAGTGCGTTCTGGCCTGTATTATCATTGTCAGCTTGAGAGGTGCCCTTCGCAAATTCCAGGATGTGCCAAAGCAGTGGCAACTCAACAAGATAGATGCCGTCGTCTGGTCGATCACCATGCTGTCATCGGCTCTGATCAGCGTGGAGATGGGACTGTTGGTTGGAGTCATCTTCTCCATGCTTTGTGTGGTGGCTCGTACCCAGGTCCCCAAAGTAGCCATTCTGGGCCAAGTCCAGGACACTGGCTTCTATGAGGACAGCAGCGAATACGAGAACCTCTTAACAGTCCCTAAAGTGAAGATATTCCGCTTCCAGGCTCCGCTGTACTATGCCAACAAGGACTTCTTCCTTAAATCGCTCTACAAATCTGTAGGGGTGGAGCCCTTCTTAGAAATCACCAAAAAGAAGAAGGCAGAGAAGAGGGCAAAGCAATTGGCTGCCAAGCAGGCTAGGGAAAATGACCTTGACAAAACCAATGGAGAAGCCACAGTTAGCTTGGTTCCGAAAGAACTTGACTTCCATACAGTTGTCTTAGACTGTTCTTCAATGCCTTTTATGGATACCACGGGGATGATTACCTTTAAAGGAATAGTGAAAGACTATAAAGAGGTTGGGGTCAGCATCCTACTGGCCTGTTGTAACCCCTCTGTGATAGAATCCTTAAAACGAGGGGGTTTCTTTGGAATAGAAGACAAAGACATCAGTAGCATGTTGTTTTACACTGTGCACAGCGCTGTCTTGTTTGCCAAAAGCAGAGAATCGACAGTCAATGACTCAGTCGTGTAG

Function

GO:

id name namespace
GO:1902358 sulfate transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG:

id description
K14700 SLC26A1, SAT1; solute carrier family 26 (sulfate anion transporter), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99134 lncRNA downstream 267575 22734995 ~ 22735440 (-) True G79483
TU99106 lncRNA downstream 308056 22681665 ~ 22694959 (-) True G79466
TU99051 lncRNA downstream 619885 22380734 ~ 22383130 (-) True G79430
TU99042 lncRNA downstream 694695 22308118 ~ 22308320 (-) True G79424
TU99019 lncRNA downstream 904227 22096838 ~ 22098788 (-) True G79407
TU99199 lncRNA upstream 91156 23096602 ~ 23097308 (-) True G79541
TU99200 lncRNA upstream 103407 23108853 ~ 23109092 (-) True G79542
TU99206 lncRNA upstream 135939 23141385 ~ 23145055 (-) False G79548
TU99207 lncRNA upstream 135939 23141385 ~ 23147069 (-) True G79548
TU99264 lncRNA upstream 321542 23326988 ~ 23327361 (-) True G79594
AMCG00010286 mRNA downstream 6574 22987407 ~ 22996441 (-) True AMCG00010286
AMCG00010287 mRNA downstream 133564 22859678 ~ 22869451 (-) True AMCG00010287
AMCG00010280 mRNA downstream 294626 22699738 ~ 22708389 (-) True AMCG00010280
AMCG00010277 mRNA downstream 472473 22452189 ~ 22530542 (-) True AMCG00010277
AMCG00010276 mRNA downstream 559486 22436424 ~ 22443529 (-) True AMCG00010276
AMCG00010285 mRNA upstream 38608 23044054 ~ 23047441 (-) True AMCG00010285
AMCG00010288 mRNA upstream 77209 23082655 ~ 23086345 (-) True AMCG00010288
AMCG00010289 mRNA upstream 99414 23104860 ~ 23105966 (-) True AMCG00010289
AMCG00010294 mRNA upstream 159521 23164967 ~ 23168709 (-) True AMCG00010294
AMCG00010296 mRNA upstream 170328 23175774 ~ 23201168 (-) True AMCG00010296
TU98958 other downstream 1021041 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 1921190 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 2061622 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 5057254 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 5147285 17852867 ~ 17855730 (-) False AMCG00010190
TU99198 other upstream 77400 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 354197 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 3367296 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 8948938 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 9990004 32995450 ~ 32999999 (-) False AMCG00010509

Expression Profile