RNA id: AMCG00010286


Basic Information

Item Value
RNA id AMCG00010286
length 3035
RNA type mRNA
GC content 0.41
exon number 13
gene id AMCG00010286
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22987407 ~ 22996441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTCATCAACAATGGCGGAGAGTGCTACCACTGACGTAATAAAAAAGACGTAATTTCTACTGGCCAATCAGCGGGCCCCTCCTGAGCAAGCCGAAATTTTTGAATTTCTGTGTAGCGAGTATTGAGGTGTCCGGTAGTGAAAGGGGAAATACGGAACacagctttttaaattgttatatatattttagactAAACCAGAAGCAGGGCATACAAATAACGTTTAGACTTCATAGCAAGCTTTGTTCATCCGTTTCATTCATCATGCCGAACAGAAGAAGTGAGGCCTTGGCCTTTTCCCTTGTGACTGGCATTAATCTGGCCATGGCGAGGCTGGTGGACATCTGGGACAGCATCGGGATCCTGGAGGAGCAGCGGGTGGAGCGCATGGAGGCGGTGAAGAAGCACATTGATATTGATGATGGTCTGACTGTCCTGCAATTGGAGAAGGATCTGCGCACAAAAATGGAAGCACTCGCAAAAGAGAGGAATGATCGACTCAAGGAGCTGGAGAGCTTGAGGGAGGATGACAACGCCTTGTGCATAGAGTTGTGCACCACTCCCTACTACATCCCTACTGGCAGCCTGCCGTCACGCTCTCAGCTCCAGGACCTGCGAGAACACATCAAAACTCTTACAGAAGAAAAGAAAAACCGTGTGAAAGTGTTTTCTGGACTCCGACAAGATATCAGCCAGTTAATGAGTGAAATTGGCCACTCGCCTGAGACCAGTGTGGAAAAGGAGGCAGTCTGTGATGATGCAGATGTCTTCCTTCTTACCAATGAGAATATCAAAGCTCTCCAAATGTTAAAGTTCCAGCTGGAAGTTAAAAAAGATTCATTGACATTGACCCGGGGCGAACTGAAAGAGAAGGTTCTTAATCTGTGGAATCGGTTGGAATTCACGGAGCAGGAGAAGGCAGCATTTGAAGACAACCTAAAAGCCTCCTTGTCTGATGAGATTGCAGATTGGCAGAATGAGCTGGAGCgcctggaggagctgaagaaaGCTAATCTTCAAGAAGTCATTGAGAAGATCAGGATAGAACTTACAGAGTACTGGGAGACATGCAAGTTTGGTTCTGAACAAAAGAATTCCTGCACATTCTTCTTTGATGATAACTTCACTGAGGAATTGCTTACCAAGCACGATGAAGAGCTGCTTCGTGTCAAAGAGTACTACAAGAATGCCAAGCCTATGTTGGAGAATGTGGAGAGATGGGAGAAGAATTGGGTCCTTTTCCAGGATTTTGAGAGGAAGGCATCTgatccaaacagattttccaacAGAGGAGGAACGTTGCTGAAAGATGCGAAAGAAAGGGTTAAAGTCCAGAAGATGCTTCCTAAgCTGGAGGAAGATCTAAAGAGCTCCATTGAGATATGGGAAGCAGAGCAGGGTACTGAGTTTCTTATCGGAGGCCTGAGAATAATGGATTACATTGGGAGACAATGGGAAGAGCACAGATTACTGAAGGGAAAAGAGAAGAGTGAACGTGTCACAAAGAAGGATCCTTCAGTTGTGAAAACACCAGGAAAACGCCCCCACGGAGGACTGATTACAAACACGCCTAGCAAGATGAGGAAGGTTCCAGGAAATCCAAACGTCTCTGTACAGCGGGTAACGAGTACCAGCTCCAGCAGCTCCAGTAATAACAGCACTGCTAGCACCTTTAACAGTGTGAGCGGTAAACCCCCTCTCTCTACATCCAAGGCCCAGCAGAAGAACAGATTTTTGGATGTTTCTCAAAGGACACCATTGCAAGAATTCAACAGTGAGAAAAAGCATGTTAAAATTGGCAGTTACACAGAGTTTACCAAAGAACTTGCACAGAAGTCACAGAATCTAGAAGCTGTTCTGAACTCCACCACAAAGGATATCCTCAaataatgtcaaaatgtttgtttttaattttctccacTCTTTCAACTTGGCATCAAGCATTTGTTTCTGCACCAACAATGACTTATGAATGTCATTCTGCAGACTTAGGTTTCTGGTCCCAATCAGGTCAATGTTATAAATGtgacttatttttttacctttgaGGTATTAATTGATGGTTGTATCTTGCCGtctcttgttttttcttatctAGGTTTGGGTCACTTTGCATTTCAGTTATTGCACATTTCAATAGTTGTCtagcttttaatttcagagtaatGCAATATGTTTGAAAAAGTTCCTAGCAGCAGACTATTACATTGAATTAATGTCACTCTTTTGTTAAGTCAATTTTGATGAGACcttggagagagaaacaaagcattttgctttttttaaatggggatttttctttttgtttttacctggCACGTACAAAACGTCATATCATACTGCATTAATTTTATAAAGAATACCAAGGCAAACTTATATTTAACAGAAGGCCACAGATAATGCCAACtaatatacatttgaacaaatgaaatgttaagTCTATGGACTAAATGTGGTGCCACTGAACACAAGCTTTACAGTTTGCTGATTGGTCTGTTAAATATCACGCCTTGAACTATGCATTTAGATGCTGGTCAGGTAGTTTGTACCGAGGTAACAATGGTTGCAAACCTCTGGAGATATTTAAAGTGTGGCtgatatgattacattttttaagcattttaaaatgcagggcAATGCTGCATTGATTGTATGGCTTTTAACTTATTGTTTTACCCACCTATAACTAATGCCCATTGTAAGCAATGGTGAACAAAACCATAAGGGATTATAAATGATTTGCTCAATTTTAGGTCTGACTTCTCAGAACAAGATTAGCTCTACTCTTAGATAACCTGATTAGCTCATcgaagactagtgctaatcattGGCTGTGAAACCAAAAGTTAATGTATTGCTGGCTCCTCCAGAATGATGTtcttcatacatttcaaaatctttttttttttatataaagaaaatcttctgtgtaaatattttctaCTCTTCTGttggagttttgtttttatgtaaagatTTCTATTGCTTctctaaatattgttttgtgcatCTTCTAATAAATGTATCTAAATATGTA

Function

GO: NA

KEGG:

id description
K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99134 lncRNA downstream 251967 22734995 ~ 22735440 (-) True G79483
TU99106 lncRNA downstream 292448 22681665 ~ 22694959 (-) True G79466
TU99051 lncRNA downstream 604277 22380734 ~ 22383130 (-) True G79430
TU99042 lncRNA downstream 679087 22308118 ~ 22308320 (-) True G79424
TU99019 lncRNA downstream 888619 22096838 ~ 22098788 (-) True G79407
TU99199 lncRNA upstream 100161 23096602 ~ 23097308 (-) True G79541
TU99200 lncRNA upstream 112412 23108853 ~ 23109092 (-) True G79542
TU99206 lncRNA upstream 144944 23141385 ~ 23145055 (-) False G79548
TU99207 lncRNA upstream 144944 23141385 ~ 23147069 (-) True G79548
TU99264 lncRNA upstream 330547 23326988 ~ 23327361 (-) True G79594
AMCG00010287 mRNA downstream 117956 22859678 ~ 22869451 (-) True AMCG00010287
AMCG00010280 mRNA downstream 279018 22699738 ~ 22708389 (-) True AMCG00010280
AMCG00010277 mRNA downstream 456865 22452189 ~ 22530542 (-) True AMCG00010277
AMCG00010276 mRNA downstream 543878 22436424 ~ 22443529 (-) True AMCG00010276
AMCG00010275 mRNA downstream 555134 22428369 ~ 22432273 (-) True AMCG00010275
AMCG00010284 mRNA upstream 6574 23003015 ~ 23005446 (-) True AMCG00010284
AMCG00010285 mRNA upstream 47613 23044054 ~ 23047441 (-) True AMCG00010285
AMCG00010288 mRNA upstream 86214 23082655 ~ 23086345 (-) True AMCG00010288
AMCG00010289 mRNA upstream 108419 23104860 ~ 23105966 (-) True AMCG00010289
AMCG00010294 mRNA upstream 168526 23164967 ~ 23168709 (-) True AMCG00010294
TU98958 other downstream 1005433 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 1905582 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 2046014 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 5041646 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 5131677 17852867 ~ 17855730 (-) False AMCG00010190
TU99198 other upstream 86405 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 363202 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 3376301 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 8957943 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 9999009 32995450 ~ 32999999 (-) False AMCG00010509

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU283304 True 322 lncRNA 0.32 1 CI01000058 3584635 ~ 3584956 (+)
striped catfish (Pangasianodon hypophthalmus) TU283304 True 960 lncRNA 0.48 4 NC_047609.1 12210555 ~ 12215820 (+)