RNA id: TU283304


Basic Information

Item Value
RNA id TU283304
length 960
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id G239455
representative True

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12210555 ~ 12215820 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCCTCGCTGAGCTGCTTGATGTGCTCACGGAGctcctgcagctgtgtgtgagagggcATGCTGCCAGTGGGGATGTAGTAGGGTGTAGCACACAGCGTCACACACAGCTCCTCATCCTGCTGCCTAAGATCACTCAGCTCCCGCAGACGCTCACTCTTTTCCTTCTGCAGAGCCTCCAGGCGACAGCGCAGGTTCTTCTCTATCTGAAGAACCGTCAGGTCTTCCTCTAATTTATACGGTTCAATAGACAACTCGAGACACAGCGTCTCCAACTGCTTCTGAGTCGTAATGATGCTGGTTTTGATGCGATGTCTCAGCGACTCCTCTTCAGTGATCATGTCCGTCAAAAGGTCCTCAATATATTTCTTAACAGTCTGCATCCTTTCAATCCTCTGGTCCTCCATGATGCCGATACTGTCCCAGATGTCCACCAGCCTCGCCATGGCGTGATTGATGCCGGTTACGAGGGAAGAAGCCAGGGCTTCAcTTCTTCGGCTCGCCATCGTTTTTCCTTTAGGTGTGCACCACCTCTAAATAATCACAGTAGGGAAACTGCTTAAATGAGAATAATGAAATATCCCGCCCGAGGCGAACACTGAACACATCCACCGCCTTCAAATTTGAATTTGGTCGCAGTGTGTCTTCTTCATCTTTTAGGGCTTCCTGGGGCCAAGCGCCTTATTACTGCCGCCTAGCGGTCATAACCAACACAGCCGCGTCTCAACCGCTTTACTGTGTACTGCATAGCGCGCTAGTATGCAGTGTACTGTGTACTGCATAGCTTACCATGTCTAGTAGCTGTATGAAGTTTAGtattcggtgtgtgtgtgtgtgtgtgaagtaccACTTCGTAATTTAATCCATGACATATTTGTGGTTTCCTCATAGTTACCTCAGCATCAACTCTGTGACccaaaatgtgttcatttttagtaattaaaagtaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283203 lncRNA upstream 123662 12009562 ~ 12086893 (+) True G239366
TU283201 lncRNA upstream 207027 11997445 ~ 12003528 (+) True G239365
TU283200 lncRNA upstream 214457 11978499 ~ 11996098 (+) True G239364
TU283189 lncRNA upstream 264015 11946309 ~ 11946540 (+) True G239356
TU283095 lncRNA upstream 368221 11841415 ~ 11842334 (+) True G239286
TU283308 lncRNA downstream 3963 12219783 ~ 12222027 (+) True G239458
TU283327 lncRNA downstream 58704 12274524 ~ 12274746 (+) True G239475
TU283328 lncRNA downstream 61891 12277711 ~ 12278145 (+) True G239476
TU283418 lncRNA downstream 205868 12421688 ~ 12425437 (+) True G239565
TU283504 lncRNA downstream 429908 12645728 ~ 12646801 (+) True G239646
XM_034311043.1 mRNA upstream 10343 12151422 ~ 12200212 (+) True si:dkey-247m21.3
XM_026941275.2 mRNA upstream 10343 12151422 ~ 12200212 (+) False si:dkey-247m21.3
XM_034311044.1 mRNA upstream 10343 12163484 ~ 12200212 (+) False si:dkey-247m21.3
XM_026941157.2 mRNA upstream 128290 11973911 ~ 12082265 (+) True tnksa
XM_026941158.2 mRNA upstream 130184 11973911 ~ 12080371 (+) False tnksa
XM_026941076.2 mRNA downstream 31225 12247045 ~ 12260910 (+) True pde6b
XM_026941072.2 mRNA downstream 56774 12272594 ~ 12273552 (+) True LOC113543076
XM_026941071.2 mRNA downstream 62393 12278213 ~ 12286489 (+) True zgc:103482
XM_026940932.2 mRNA downstream 176931 12392751 ~ 12454977 (+) True efna5a
XM_026941458.2 mRNA downstream 338609 12554429 ~ 12555667 (+) True LOC113543337
TU283091 other upstream 361838 11838040 ~ 11848717 (+) True G239282
XR_003404416.1 other upstream 913148 11297341 ~ 11297407 (+) True LOC113543408
XR_003404414.1 other upstream 914477 11296010 ~ 11296078 (+) True LOC113543406
XR_003404415.1 other upstream 915578 11294910 ~ 11294977 (+) True LOC113543407
XR_003404410.1 other upstream 916395 11294094 ~ 11294160 (+) True LOC113543402
trnaf-gaa_27 other downstream 475422 12691242 ~ 12691314 (+) True trnaf-gaa_27
XR_003404413.1 other downstream 1912607 14128427 ~ 14128534 (+) True LOC113543405
TU284898 other downstream 2239147 14454967 ~ 14456634 (+) True G240839
TU285380 other downstream 3249133 15464953 ~ 15465303 (+) True G241254
TU286157 other downstream 4576884 16792704 ~ 16793457 (+) True G241908

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00010286 True 3035 mRNA 0.41 13 CM030129.1 22987407 ~ 22996441 (-)