G239476


Basic Information

Item Value
gene id G239476
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12277711 ~ 12278145 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU283328
gtaaactctagagattgttgtgtgtgaaaatcccaggagatcagcagtttctgaaatactcaaaccagcccatctggtaccaacaaccatgccacggttaaagtcacagagatcacactttttcccctttctgatgtttgatgtgaacattaactgaatctcttgacctgtatctgcatgtgctgctgtcacatgattggctgagtaGATAACTGCACGAATGgtcaggtgttcctaataaagtggacggtgagtgtatatcctGGCATATTTGATAcgattttaaaaacaaaaaaaagtaaaattcattattttctaaCATATAAGGTAATGGTTTGAAGTTTGgatgtattttaaattaattaagcaAGAACATTAGAAACACTAGCCTATTTAGCCTAAATTTACCTTCGCGAGATCCTAGTTGTAAAGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283328 True 435 lncRNA 0.37 1 12277711 12278145

Neighbor

gene id symbol gene type direction distance location
LOC113543076 LOC108279221,LOC107681190,LOC107589249,LOC107706446,LOC107708534,LOC107703580,LOC108436651 coding upstream 4159 12272594 ~ 12273552 (+)
pde6b pde6b,LOC108279216,LOC108436964,LOC107708533,LOC107706500,LOC107681163 coding upstream 16801 12247045 ~ 12260910 (+)
si:dkey-247m21.3 LOC108278505,LOC108436681,LOC105014741,LOC106568256 coding upstream 77499 12151422 ~ 12200212 (+)
tnksa tnksa,tnks,LOC108279024,LOC108436993,LOC107706493,LOC107681059,LOC107591704 coding upstream 195446 11973911 ~ 12082265 (+)
fybb fyb coding upstream 367367 11888291 ~ 11910344 (+)
zgc:103482 LOC108279219 coding downstream 68 12278213 ~ 12286489 (+)
efna5a LOC108279071,LOC108439616,LOC106563326,LOC106566624 coding downstream 114606 12392751 ~ 12454977 (+)
LOC113543337 LOC108278539,LOC107589289,LOC107591738,LOC107706448,LOC107708506,LOC107681111 coding downstream 276284 12554429 ~ 12555667 (+)
c7b c7 coding downstream 323994 12602139 ~ 12617536 (+)
htr1ab htr1a,LOC107591737,LOC107681135,LOC107703504,LOC107708525,LOC107589255,LOC107706510,LOC108439627 coding downstream 379448 12657593 ~ 12659219 (+)
G239475 NA non-coding upstream 2965 12274524 ~ 12274746 (+)
G239458 LOC108279218,LOC108436973,LOC107681097,LOC107706495 non-coding upstream 55684 12219783 ~ 12222027 (+)
G239455 LOC108436675,LOC108278439 non-coding upstream 61891 12210555 ~ 12215820 (+)
G239366 NA non-coding upstream 190818 12009562 ~ 12086893 (+)
G239365 NA non-coding upstream 274183 11997445 ~ 12003528 (+)
G239565 NA non-coding downstream 143543 12421688 ~ 12425437 (+)
G239646 NA non-coding downstream 367583 12645728 ~ 12646801 (+)
G239804 NA non-coding downstream 548477 12826622 ~ 12826906 (+)
G239805 NA non-coding downstream 549055 12827200 ~ 12829036 (+)
G239823 NA non-coding downstream 610208 12888353 ~ 12895428 (+)
G239282 NA other upstream 428994 11838040 ~ 11848717 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 1536331 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 1583272 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 1700279 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 2711598 9488179 ~ 9566113 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 715812 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 743122 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 1102711 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 2155432 14433577 ~ 14534213 (+)
G240839 NA other downstream 2176822 14454967 ~ 14456634 (+)

Expression


Co-expression Network