htr1ab (htr1a,LOC107591737,LOC107681135,LOC107703504,LOC107708525,LOC107589255,LOC107706510,LOC108439627)


Basic Information

Item Value
gene id htr1ab
gene name htr1a,LOC107591737,LOC107681135,LOC107703504,LOC107708525,LOC107589255,LOC107706510,LOC108439627
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12657593 ~ 12659219 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941318.2
ACTCTCATCCACCTGCGTAGGTAACTGACGTGTGATCCGGTGCTGGTATAAAAGCTCGCGCGCTCGTCACAAGCCGTCAGTGACGATGCTCATGTCCTGTTCGCGCGCGCTCCTGCAGAAGGAGTTCAGTAGGTAGGTGAGCGACGCTTTTTTCCGACTTTTGCGCTCGTTGATGCCCCGCGACATGGACGAAACAGAGAACGCGTCCTCGTTGTTCCAAAACGACAGCAATCTAGAGGACCAAAGTGACAAAGTGTCGCTGACAGCTAAGGTACCACTGAGTTATCAAATATCGACGTCTGTGCTGATCGGCGCGCTTATCCTGTGCTCGGTGTTTGGAAACGCGTGCGTCGTGGCCGCTATAGCTTTGGAGAGGTCACTCCAAAACGTGGCCAACTACCTAATCGGGTCTCTCGCCGTGACGGACCTTATGGTGTCGGTACTCGTCCTGCCTATGGCGTGCCTCTACCAAGTTTTGGACAAATGGACACTCGGACAGGTTGCATGCGACATATTTATCTCGTTGGACGTTCTGTGTTGCACGTCTTCGATTTTGCATCTGTGCGCCATTGCGCTGGACCGCTACTGGGCGATCACCGAGCCTATAGACTATATGAAAAAGAGGACGCTGAAGCGCGCGGCGGTTCTGATCGGCGCTACGTGGCTGGTGGGCTTCTTGATATCTGTGCCGCCCATGCTGATTATGAAATCGCAACCCAAAAGCAAAGCAGAAGGCATGGCCAACCCCGAAGCGTGCGCGATCAGCCACGACCCGTGGTACACCATTTACTCAACATTCTGCGCCTTTTACATCCCGCTCATCCTCATGCTCGTGTTGTACGGACGCATCTTCAAAGCGGCACGGTTTCGTATCCGCAAGACGGTACGCAGGACGGAgaagaaaaaagtcacatgcTTGACTGTGTCCCCGGCGCTGTTTCAGCGCGCCAATGGAGAGCCGGGTAAAAGCTGGAGGAGCAGCGTGGAGCCCAAGCCGGCGTCGTGCGTCAACGGCGCGGTCAAGCACACGGACGACGGCGAGTCTGTGGAGATCGTGGAAGTTCAGGGCAATTCAAAGCACGATCTGCCTTTGCCTAACACACCGAGCTCGGCGCCGCTCTTCGAGAACCGACACGAGAAAAACACGGAGGCGAAGAGAAAACTGGCGCTGGCGCGGGAGCGCAAAACCGTAAAGACGCTGGGCATCATTATGGGCACGTTCATCCTGTGCTGGCTGCCTTTCTTTATCAAAGCCCTGGTGATGCCCTTCTGCCCGTCGTGCGAGATGCCCGTGTGGCTCCAGGACGTGATCAACTGGCTCGGCTACTCCAACTCGCTGCTCAACCCCATCATCTACGCCTACTTCAACAAGGACTTCCAGAGCGCCTTCCAAAAAATCATCAAATGTCACTTTTGTCGAAAATAGCTGTGGAAAAACTCTAGTAAAACATTCCTTCAGTGGGATAAAGAATGATGACGTTTATCCCGTGGTGGAAATGGGTCATTATTCTCatcgtttattatttttattataaatttgtttctgttttcagaAAAGATGTATAATACTGTGTATAAAGGAACCCCATGTACTGCTCATGTCCATTGGAAGCATGAATGTGTTCAT

Function

symbol description
htr1a Enables G protein-coupled serotonin receptor activity and receptor-receptor interaction. Involved in adenylate cyclase-inhibiting serotonin receptor signaling pathway. Is integral component of plasma membrane. Implicated in anxiety disorder; mental depression; and panic disorder. Biomarker of Alzheimer's disease and mental depression.

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 1A-beta

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0046883 regulation of hormone secretion biological_process
GO:0008283 cell population proliferation biological_process
GO:0042310 vasoconstriction biological_process
GO:0050795 regulation of behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941318.2 True 1627 mRNA 0.52 1 12657593 12659219

Neighbor

gene id symbol gene type direction distance location
c7b c7 coding upstream 40057 12602139 ~ 12617536 (+)
LOC113543337 LOC108278539,LOC107589289,LOC107591738,LOC107706448,LOC107708506,LOC107681111 coding upstream 101926 12554429 ~ 12555667 (+)
efna5a LOC108279071,LOC108439616,LOC106563326,LOC106566624 coding upstream 202616 12392751 ~ 12454977 (+)
zgc:103482 LOC108279219 coding upstream 371104 12278213 ~ 12286489 (+)
LOC113543076 LOC108279221,LOC107681190,LOC107589249,LOC107706446,LOC107708534,LOC107703580,LOC108436651 coding upstream 384041 12272594 ~ 12273552 (+)
trnaf-gaa_27 NA coding downstream 32023 12691242 ~ 12691314 (+)
ndr1 LOC108279289 coding downstream 51770 12710989 ~ 12713680 (+)
rictorb rictor,LOC107681152,LOC107589259 coding downstream 190445 12849664 ~ 12887080 (+)
lifrb NA coding downstream 237727 12896946 ~ 12922245 (+)
ccdc61 ccdc61,LOC107589261,LOC107681161 coding downstream 264558 12923777 ~ 12935549 (+)
G239646 NA non-coding upstream 10792 12645728 ~ 12646801 (+)
G239565 NA non-coding upstream 232156 12421688 ~ 12425437 (+)
G239476 NA non-coding upstream 379448 12277711 ~ 12278145 (+)
G239475 NA non-coding upstream 382847 12274524 ~ 12274746 (+)
G239458 LOC108279218,LOC108436973,LOC107681097,LOC107706495 non-coding upstream 435566 12219783 ~ 12222027 (+)
G239804 NA non-coding downstream 167403 12826622 ~ 12826906 (+)
G239805 NA non-coding downstream 167981 12827200 ~ 12829036 (+)
G239823 NA non-coding downstream 229134 12888353 ~ 12895428 (+)
G239935 NA non-coding downstream 359117 13018336 ~ 13319694 (+)
LOC117599121 NA non-coding downstream 496587 13155806 ~ 13156412 (+)
G239282 NA other upstream 808876 11838040 ~ 11848717 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 1916213 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 1963154 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 2080161 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 3091480 9488179 ~ 9566113 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 334738 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 362048 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 721637 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 1774358 14433577 ~ 14534213 (+)
G240839 NA other downstream 1795748 14454967 ~ 14456634 (+)

Expression


Co-expression Network