G239282


Basic Information

Item Value
gene id G239282
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11838040 ~ 11848717 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU283091
AGGGAGTGTGAAATATTGAGGGGATTTGGGCTCTTACCACACACATGATGTAGGACAGGATGGCTCCAGATGAGCCGATCAGCGCTCCAACGATGGTGAGCAGATTGTTGTTGAGCAGGAAGCCCTCAGCACACAAAGCCCAGCCTGAGTAACTGTTCAGCACCGTGATGACCACTGGCATGTCTGCTCCACCAATGGCTGCAGTCAGAGTCACCccctacacacagaaacacacacacacacacacacacacacacacacacacacacacacacacacacacaggatcaaAGAGATTGTAGAGGAAGGAAACAAGACAGCAGAGAGGGAAAATTACGACCCCTTGAGGGGTCAAATAAAATGCACATCCGATTTGCTACATTTCATAAGTGAATCTgcatatttcaatttttttatattacagtcTATGACTTAAGAATGAACCACTTTCAAAACAAGTTAACAACCTTAAACAACCCAAGTGATCGAGTTGACATGCCTCCTGGGGCTGGACTCTTGATAAGCATCACCTCTCTAATCGTTTTCGAATGCTTCTGTGGTTGGAGGGACTGCTGACTGACCAAAAACCCTAAAGTGGCCTTTAGGTGGTCAGGGGGTCTCTTGAGTCAATGAAGTGTGCAACGGTTGTTGAGCATTTCCTCTCACTTTGTAATTCCAGAGGAACAATTGATCGCAGGCCGGCGCACGGAACCCAAACGCACGCTACCTCCATGCTGCAGGAAACGCTGCAGACGAACTGTAAACCTACACAGGCACGCATCCatgttcatatacacacacacgcacacacacgcctctGGACATCTGTAATAAAACCTTTGATGAAAGGAAAACGTATTCGAGGACACACACTGGGGGGATGCTAAAAAATAGATTTGAAACTGTAGCTCACATGAAGCGCTCAACACCTGGATGAAGTTTCCTTCACAAACATCTACAAGGCATCATTAGTTACGACAACATAGTGACTCTAGAAGCAGCCAAGAAATGGTCAAGCCACTGAATGCGGCACTACTTCACAATAATTTAGCTTCACATGGCTCCGGGACTCATCCTGACACATTCTTCAGACGTTCCAAAAGGTCATTTCGAGGACCCGAGACATTGGGTCATGCTGATTTCATCGGTCTCAGGTAGATTAAAGAGTCTGGAGTGAACTGTATTCTGGTCGAATGGAACACTGCCATTCATCCCATGGCATGTCGCTCTTACACCTTCACAGACAAGAAATTCCACACAGATGTTCTAACGTCTCGTTCACTCTGATTCAAAGACTATCACTTTGGGCTCATGGCATTTTCCAGGTATGTAAAGAAGAACAGCTAGAGTTCACAATGTGTCAAGGAGAATACCTCCATAGACAAGGGGGGTGGAGACAGTGGTGTGGAACGGTAATAAGTGATTTCACAGGAGCTGTGCAGTGGGTTGAGAGAGCTAATTGCTTCAGTGGATGCCCGCATGGTCTCATTCAGCAGTTTACAGCTTGCAGGCTCTTTAATGTGGGCCACCAAGGACtcgttaaaaaaatgaaacgttTCCGAGTCCTTCAGCTAGCCAAGAGAAACGGGGCAAAAGCTTAACGAAGCGTCCTGGCTGCAGGAGACATCCTCCACCGTGTAATCACGTCTACTCAGGCTTATGctcactttacttttttttaagcttaaaGTCATGATTCAGCTAACTGTATATCCTTAGACCAAACAGAGTCGATCTTTTCTTTACTCATGGCATCCATAATTAACCAGGACAATATCCTAGACTACAAGATACCATGTGTTCGTAGAGTTATGCTGTACATGTTTCAGCTGAGGTGGACAGACAGCTATGCCGATGGTGATGGAGAGCTGCACGGTCATCACCGGGAAGCAACTGACGCATCCGAGTGGTAGATTAAATATTACTGATGGAGGAGCCCAGGCagtgaaaaaagacagaatttgAAGTATTAACATTCCGGCACTGAAAATCTCCAAGTGGGTAAAACAGTCCTCCAAAAACCACCAATTCGCATAAATTCCACCctcttccaaatgaataaactatT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283091 True 2068 TUCP 0.46 2 11838040 11848717

Neighbor

gene id symbol gene type direction distance location
fgf10a LOC108278508,LOC103389109,LOC101070196,LOC104961613 coding upstream 60684 11758420 ~ 11777356 (+)
rai14 rai14 coding upstream 119274 11652081 ~ 11718766 (+)
LOC113543195 NA coding upstream 199742 11634381 ~ 11638298 (+)
slc45a2 slc45a2 coding upstream 224154 11585077 ~ 11613886 (+)
amacr amacr coding upstream 252833 11564964 ~ 11585207 (+)
ccdc80l2 LOC108278473 coding downstream 21025 11869742 ~ 11879048 (+)
fybb fyb coding downstream 39574 11888291 ~ 11910344 (+)
tnksa tnksa,tnks,LOC108279024,LOC108436993,LOC107706493,LOC107681059,LOC107591704 coding downstream 125194 11973911 ~ 12082265 (+)
si:dkey-247m21.3 LOC108278505,LOC108436681,LOC105014741,LOC106568256 coding downstream 302705 12151422 ~ 12200212 (+)
pde6b pde6b,LOC108279216,LOC108436964,LOC107708533,LOC107706500,LOC107681163 coding downstream 398328 12247045 ~ 12260910 (+)
G239262 NA non-coding upstream 13111 11756798 ~ 11824929 (+)
G239231 NA non-coding upstream 95836 11710059 ~ 11742204 (+)
G239230 NA non-coding upstream 163595 11671589 ~ 11674445 (+)
G239085 NA non-coding upstream 386967 11449911 ~ 11451073 (+)
G238987 NA non-coding upstream 629322 11139045 ~ 11208718 (+)
G239356 NA non-coding downstream 97592 11946309 ~ 11946540 (+)
G239364 NA non-coding downstream 129782 11978499 ~ 11996098 (+)
G239365 NA non-coding downstream 148728 11997445 ~ 12003528 (+)
G239366 NA non-coding downstream 160845 12009562 ~ 12086893 (+)
G239455 LOC108436675,LOC108278439 non-coding downstream 361838 12210555 ~ 12215820 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 1096660 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 1143601 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 1260608 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 2271927 9488179 ~ 9566113 (+)
c1qb NA other upstream 2513172 9323196 ~ 9324868 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 1145240 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 1172550 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 1532139 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 2584860 14433577 ~ 14534213 (+)
G240839 NA other downstream 2606250 14454967 ~ 14456634 (+)

Expression


Co-expression Network