G239230


Basic Information

Item Value
gene id G239230
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11671589 ~ 11674445 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU283035
tttttcatttttttaatttttaaatcagGTTTTAGCAGGCATTTGACATGGTTCCCATTGAGCTAttgtcatgaaacttgaatggtagTTTCAGGGAGGGACTTATTAGTGGGTACTATTCATATTTATAGGGGTTGGCATTAAGTTCAAACAGGTGTTTCTCAAGAACGAAAAGTCcaattgagctgaaatttggtgtgctgcatCAATCTGCTAAactgtaactggatttttaatcatcactgaattacatcaaaaacatgactggtttcagccaatcagctctCAACAGGCATTTTAAACAACTAGCATTGagctatcatcacaaaacttttGTTAAGTATGTTCATGTTTGGCATCTTTATGGTTCTGTGTAACTTGGAAAGAACTGTCCACTGGGGATGCTGTTTGTGGGGTGTGCTTGGACCCTGTAGATTGCTGCTTGtggctatatttattttttatgtcagAGTTATCCCTCTGATTGACTGTCCTGATTCAGACAGGTATGTCTGTCTCTTCATTTCAGTGTGGACGAAGCACTTTTTGACATTGTgaattgtgtttctgtgtggaCATGACATTTGCCTCAGTCTCCAACATGTTTGCAACAGCCTGGTCTAGTTTTTTATTCAAGATGCTCAGCAGACAAGTAGGTTCAACGCcaagagaaatgaaataaaccCTATTTTCTATtcactttcacaaaacaaaagttttcatttggttGCTATATTTAAACGTCACATGCTTTATGACAGTACCACACACCTCATTGCTATAACTATAGTGTCTGAGTCCTgctgcctgctgcactacacacatctgCTGAGGTGTGATCTTTTCCGATTCACGGATACGCTGCTATGTGAAAACACAGATGAATCCGGGCAAACCAATGTGCAGTGCAAAGCTGTCATTTATCCGTCCTGCTAGCACAAAACAGTCACCTTCACTGCCAATCATTGTGCAATCGGACACACCCAGTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283035 True 992 lncRNA 0.40 2 11671589 11674445

Neighbor

gene id symbol gene type direction distance location
LOC113543195 NA coding upstream 33291 11634381 ~ 11638298 (+)
slc45a2 slc45a2 coding upstream 57703 11585077 ~ 11613886 (+)
amacr amacr coding upstream 86382 11564964 ~ 11585207 (+)
btc LOC108278992 coding upstream 129643 11523823 ~ 11541946 (+)
hpse hpse coding upstream 158986 11498152 ~ 11512603 (+)
fgf10a LOC108278508,LOC103389109,LOC101070196,LOC104961613 coding downstream 83975 11758420 ~ 11777356 (+)
ccdc80l2 LOC108278473 coding downstream 195297 11869742 ~ 11879048 (+)
fybb fyb coding downstream 213846 11888291 ~ 11910344 (+)
tnksa tnksa,tnks,LOC108279024,LOC108436993,LOC107706493,LOC107681059,LOC107591704 coding downstream 299466 11973911 ~ 12082265 (+)
si:dkey-247m21.3 LOC108278505,LOC108436681,LOC105014741,LOC106568256 coding downstream 476977 12151422 ~ 12200212 (+)
G239085 NA non-coding upstream 220516 11449911 ~ 11451073 (+)
G238987 NA non-coding upstream 462871 11139045 ~ 11208718 (+)
G238848 NA non-coding upstream 809975 10861354 ~ 10861614 (+)
G238818 sptan1 non-coding upstream 817334 10768826 ~ 10854255 (+)
G238830 NA non-coding upstream 882787 10785365 ~ 10788802 (+)
G239231 NA non-coding downstream 35614 11710059 ~ 11742204 (+)
G239262 NA non-coding downstream 82353 11756798 ~ 11824929 (+)
G239286 nnt,LOC108437056,LOC107589270,LOC107681058,LOC107706486,LOC107750406 non-coding downstream 166970 11841415 ~ 11842334 (+)
G239356 NA non-coding downstream 271864 11946309 ~ 11946540 (+)
G239364 NA non-coding downstream 304054 11978499 ~ 11996098 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 930209 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 977150 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 1094157 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 2105476 9488179 ~ 9566113 (+)
c1qb NA other upstream 2346721 9323196 ~ 9324868 (+)
G239282 NA other downstream 163595 11838040 ~ 11848717 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 1319512 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 1346822 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 1706411 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 2759132 14433577 ~ 14534213 (+)

Expression


Co-expression Network