G239286 (nnt,LOC108437056,LOC107589270,LOC107681058,LOC107706486,LOC107750406)


Basic Information

Item Value
gene id G239286
gene name nnt,LOC108437056,LOC107589270,LOC107681058,LOC107706486,LOC107750406
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11841415 ~ 11842334 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU283095
GGAGGAAAAAATAAGCATTCACCTTGCAGTTTGCCGTATGCGACTAGGGAACCGCTGAAGGTGACGCCACCGATGTAGGTGCCCAGGTATGCAACAATCTTGGTGAGGTTGGCAGCAGGGTCTGTGGCAAAGTGCGGGTACTCCACCATGTACTCGGCCACGCAGGTGAGCACGGCGGCCAAACCGACCAGACTGTGGAAGGCAGCCACTAGCTGAGGCAGATCTGAAATCTGGATCTTCTTGGCGATGGCCAAACCTGTGAGGGtggaaaaagcaaaaatgtattTAGCTCTGCTAGGAAAAACAGTCACGACaggttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcaaggcTGGCAAAGACCTGGAGGTTTAAATTAGCATCTGGAACCATGCAGGCACTGCACGGGACGGCTTCAACTCCATTCCAGCAGGTTTCCAGGAATAATTAGCAATTTAGATTAGATGTGACTGGCTACAAAGACACCGCCGCTGTGCCGCGTGTGACTCATGACCTGATGACCATTACCTGAGCTCACAGGCAGCTCACTGACTCAGCtgtttacacactgacacacttatTTGGGTGTTTGGAGACTTCAAAGGAACGTGTGAACCAAATATGTCTGTTTTTACAGCACTGCAccaagacagacacacagacagaattTCACTCACCGGCAGTGCCACCCACGGCCATGGCAGCGCTCATCTGGCCCAGGAGCTCAGGGGAGGGCTTCAGGACACCCAGAGTTGCAGCGATGCCACCTGCCACTCCGATCATACCCAGGGCATTACCCAGGCGCGCTGTGGACTGAGTGGACAGACCGCCCAGAGCGCCAACGCAGCACAGGCCAGAGCCCAGGTACATCATCTGAGCAAA

Function

symbol description
nnt Predicted to enable NAD binding activity; NAD(P)+ transhydrogenase activity; and NADP binding activity. Predicted to be involved in NADPH regeneration. Predicted to act upstream of or within proton transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in familial glucocorticoid deficiency. Orthologous to human NNT (nicotinamide nucleotide transhydrogenase).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283095 True 892 lncRNA 0.53 2 11841415 11842334

Neighbor

gene id symbol gene type direction distance location
fgf10a LOC108278508,LOC103389109,LOC101070196,LOC104961613 coding upstream 64059 11758420 ~ 11777356 (+)
rai14 rai14 coding upstream 122649 11652081 ~ 11718766 (+)
LOC113543195 NA coding upstream 203117 11634381 ~ 11638298 (+)
slc45a2 slc45a2 coding upstream 227529 11585077 ~ 11613886 (+)
amacr amacr coding upstream 256208 11564964 ~ 11585207 (+)
ccdc80l2 LOC108278473 coding downstream 27408 11869742 ~ 11879048 (+)
fybb fyb coding downstream 45957 11888291 ~ 11910344 (+)
tnksa tnksa,tnks,LOC108279024,LOC108436993,LOC107706493,LOC107681059,LOC107591704 coding downstream 131577 11973911 ~ 12082265 (+)
si:dkey-247m21.3 LOC108278505,LOC108436681,LOC105014741,LOC106568256 coding downstream 309088 12151422 ~ 12200212 (+)
pde6b pde6b,LOC108279216,LOC108436964,LOC107708533,LOC107706500,LOC107681163 coding downstream 404711 12247045 ~ 12260910 (+)
G239262 NA non-coding upstream 16486 11756798 ~ 11824929 (+)
G239231 NA non-coding upstream 99211 11710059 ~ 11742204 (+)
G239230 NA non-coding upstream 166970 11671589 ~ 11674445 (+)
G239085 NA non-coding upstream 390342 11449911 ~ 11451073 (+)
G238987 NA non-coding upstream 632697 11139045 ~ 11208718 (+)
G239356 NA non-coding downstream 103975 11946309 ~ 11946540 (+)
G239364 NA non-coding downstream 136165 11978499 ~ 11996098 (+)
G239365 NA non-coding downstream 155111 11997445 ~ 12003528 (+)
G239366 NA non-coding downstream 167228 12009562 ~ 12086893 (+)
G239455 LOC108436675,LOC108278439 non-coding downstream 368221 12210555 ~ 12215820 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 1100035 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 1146976 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 1263983 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 2275302 9488179 ~ 9566113 (+)
c1qb NA other upstream 2516547 9323196 ~ 9324868 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 1151623 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 1178933 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 1538522 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 2591243 14433577 ~ 14534213 (+)
G240839 NA other downstream 2612633 14454967 ~ 14456634 (+)

Expression


Co-expression Network