slc45a2 (slc45a2)


Basic Information

Item Value
gene id slc45a2
gene name slc45a2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11585077 ~ 11613886 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941355.2
ATGACTCTACTGACAGAGGAGAAGCCCTACAAGTTCCCGCAGGAGATGGGAAgctacaccaccaccaccatgaaGCGCCACTCCATGGACTGCAGCCCTAACGGTGACTATGTGGATGCCATGGAGGGGGCCGTGTTTAGGGCTGTGGAGCCTCCGAGGAGGTCGCATGGACGCCTCATCATGCACGCCATGGTGATGTTCGGAAGGGAATTCTGCTATGCTGTGGAGGCTGCATTTGTCACACCCGTCTTGCTAAGTGTGGGACTCCCACGAAGCCTTTACAGCCTGGTGTGGCTCATCAGCCCTGTCCTGGGCTTCATTCTCCAGCCAGTGATCGGCTCAGCCAGTGACTACTGCCGCTCGCCATGGGGACGCAGGAGACCCTACATCCTTACGCTGGGGGTTATGATGCTTATCGGCATCACCCTGTTTCTCAATGGAGATGCTCTGGTATCAGTGCTGGTGAGGCACGTCGGTTGGAAGAGAACGTGGTCCATAGTGGTGGTCATGTTTGGAGTGGTCATGTTTGACTTTTCAGCGGATTTTATAGATGGGCCGGTGAAAGCCTACCTGTTTGACGTGTGCTCTTACCAGGACAAGGAGAGAGGCCTGCATTACCACGCCCTGCTTACTGGTCTGGGTGGAGCATGTGGGTACCTGACTGGTGCGATGGACTGGGGTCATTCTGCACTGGGAGCCCTACTGGGCTCAGAGTACCAGGTCATTTATTTCTTTGCAGCGATCACCTGGGGAttcttcctcactgtgcacCTCTTCAGCATTCCCGAGAAGCCTCTGGGAAAGCAGCATCCTACTGAGCCCTTGGTCCCCGGTGCCCCCTTGCTGCAGCCACCAGTAATGAATGGTTCCACATACGGTTCTGTGACTAAAGAGCCTGAGCTGCGACCTCGCTCATTCTCAGCTCTAAGCGAGGCCAACTCCATCACATCCAGCTCCAAGCAGCCGAGCAGTGAGgtacAGAAGAGGATGACTCTGAAATCATTACTATCTGCCATGATGAACATGCCCAGTCACTATCGCTGCCTATGTATCAGCCACCTGCTGGGCTGGACTGCTTTCCTCTGCAACATGCTCTTCTTCACTGACTTTATGGGGCAGATTGTGTATAAGGGGAACCCGTATGCTCCTCATAACTCCACCGCATATGCCACCTATGAGAGGGGGGTGGAGGTGGGCTGCTGGGGGCTGTGCATCAACGCTGTGTCCTCTGCTCTCTATTCCTACATACAGAGGCTGCTACTGCCCTACATCGGCTTGAAGGGTCTCTACTTCATGGGCTACTTTGTGTTCGGACTGGGCACAAGCCTGATTGGTCTGTTTCCCAATATCATCTCCACGCTGtcactgtgctgtgtgttcgGGGTGATGTCCAGCACACTTTACACCATCCCATTCAACCTGATCTCAGAGTACCACAAAGAGGAggagGAGAAGAGGAAGCAGAGTGGGAAGGACGCACCTCTGCAGAGCAGAGGGACAGGAATGGACTGTGCAGCTCTGACCTGTATGGTGCAGTTAGCTCAGATCATAGTGGGAGCTGGACTTGGAACTCTAGTCAATATGGCCGGTAGCGTCATAGTGGTGGTTCTATCGGCTTCAACCGTGTCCCTCCTCGGCTGCCTGTTTATTACTGTCTTTATTAAACATGTACAATGAACTGGACAcattgaaataaatacaaaggcTCTCTTACTAGTCTCTTTCA

Function

symbol description
slc45a2 Predicted to enable sucrose:proton symporter activity. Acts upstream of or within melanocyte differentiation and response to light stimulus. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in several structures, including melanoblast; optic vesicle; pigment cell; presumptive retinal pigmented epithelium; and retina. Used to study cataract. Human ortholog(s) of this gene implicated in oculocutaneous albinism type IV and pigmentation disease. Orthologous to human SLC45A2 (solute carrier family 45 member 2).

NR:

description
membrane-associated transporter protein isoform X1

GO:

id name namespace
GO:0009416 response to light stimulus biological_process

KEGG:

id description
K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941355.2 True 1726 mRNA 0.53 7 11585077 11613886

Neighbor

gene id symbol gene type direction distance location
btc LOC108278992 coding upstream 43131 11523823 ~ 11541946 (+)
hpse hpse coding upstream 72474 11498152 ~ 11512603 (+)
helq helq,LOC107681193,LOC107591711 coding upstream 88406 11477100 ~ 11496671 (+)
abraxas1 fam175a coding upstream 113919 11465523 ~ 11471158 (+)
nkx6.1 nkx6-1,nkx6.1,LOC107706438,LOC107700773 coding upstream 280231 11301651 ~ 11304846 (+)
LOC113543195 NA coding downstream 20495 11634381 ~ 11638298 (+)
rai14 rai14 coding downstream 38195 11652081 ~ 11718766 (+)
fgf10a LOC108278508,LOC103389109,LOC101070196,LOC104961613 coding downstream 144534 11758420 ~ 11777356 (+)
ccdc80l2 LOC108278473 coding downstream 255856 11869742 ~ 11879048 (+)
fybb fyb coding downstream 274405 11888291 ~ 11910344 (+)
G239085 NA non-coding upstream 134004 11449911 ~ 11451073 (+)
G238987 NA non-coding upstream 376359 11139045 ~ 11208718 (+)
G238848 NA non-coding upstream 723463 10861354 ~ 10861614 (+)
G238818 sptan1 non-coding upstream 730822 10768826 ~ 10854255 (+)
G239230 NA non-coding downstream 57703 11671589 ~ 11674445 (+)
G239231 NA non-coding downstream 96173 11710059 ~ 11742204 (+)
G239262 NA non-coding downstream 142912 11756798 ~ 11824929 (+)
G239286 nnt,LOC108437056,LOC107589270,LOC107681058,LOC107706486,LOC107750406 non-coding downstream 227529 11841415 ~ 11842334 (+)
G239356 NA non-coding downstream 332423 11946309 ~ 11946540 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 843697 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 890638 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 1007645 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 2018964 9488179 ~ 9566113 (+)
c1qb NA other upstream 2260209 9323196 ~ 9324868 (+)
G239282 NA other downstream 224154 11838040 ~ 11848717 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 1380071 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 1407381 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 1766970 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 2819691 14433577 ~ 14534213 (+)

Expression


Co-expression Network