sdhaf1 (sdhaf1,LOC102800057)


Basic Information

Item Value
gene id sdhaf1
gene name sdhaf1,LOC102800057
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12993957 ~ 12996622 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU283816
AATAGTGTAGCAGCTAGTCTGCTAAGTAGCTGGTAGTCGTTTTGAAAAGTGAGTTGAGAGATTTAATAAATATGAGCAAAATAATTTGTCGTCGAGTTTTTGCGAATGAAGTAGTAACACCTCACTGACACAGCAGGTTTCTCTCTTCCCGCTCACTCCATCTCCACTATGGTGCGTCACAGCAAGCTTCAGAAACAGGTGTTATCTCTGTACCGTCAGTTCCTGCGTGCTGGACAGGACAAACCCGGTTTTTTACCCAGAATACGGGAAGAATTTCGCACAAACGCCACCATCCAAAAGACAGATGTGATGCATATAGAATATTTATGTCGACGAGCCCAGAGGCAACTGGAGCAACTTCGAGATGTGAACACCAAACAGCTGGGTTTCTTCAGCAAGACCAAGGAGGATAgctgatatatttatatgtttccAATATATAtatcctgaccatcacaccaatatgtgggtcttccccaaactgttgccacaaagttggaagcacacaattgtatagaaagtctctgtatgctgtagcattacaattttacattcactggaattaagaggcccaaacctgttccagcttgactacgcccctgtgcacaaaccgagctccatgaagacatggcttgccaaggttgatgtggaggaactcgagtggcctgcgcagagccctgacctcaacctcactgacgacatttgggatgaattggaatgctgactgcgccCCAGGTTGTctcatctgacatcagtgcctgacctcactactgctcttgtggctgaatggacaaatccccacagccacgctccaaaatctaggggaaagccttcctaggagagtggaggatattacaacagcaaagggggactaaatccggaatgggatgttcaaaaagcacacatgaacatgatggtcaggtgtccacaaactttggccatatagtgtagatttaAGAAGCTGATGGACAAACAGGGTTTCTTGAGGTGCCAAAAACACTGCACCATAATGCTGATCAATCTTACAAATGAAAACAGTGTTTAGCAATTGTCCTGATGTCTTTAACAGGTTAATGTACATAGAGTTGTCAGTTTATCAGGTCCACCTACCGTATAGATCATACACTTACTTCCTTCAGCCCATTGGTTGTTATGCACAAAAGTATTAGCCCCCCTTTATTCTGTCTATTAATTGAAAGGGCGCACCACTGAGCAGATGTTATTTGGATGGTGGTTTATTTTCAGTCCAGCAGTGAACTGACATAGTGTGTATGTGGTGCTAGTACGAGTGTACAGTCAGTCATTTTAAACCTATAAATTGACCTGTTAGCAACTGTACCTGATAAACTAGCAGCTTGGTGTATGTCTGCATAACACTCCAACTCATACGGATCTCTGTTACCCTGGAAGTATTTTCCTTTGTGTGGTCATGTAGTAAAATGTGGCTGAATAAAGGTTGGAGTATGTTGCTATATTTTAATACTGACGTTTGACCAGCAACTTCagaaaagataaatataaatataagagataccagtgatcctgactccttctgctctccggacctgcctgatccatcctgatatcctacttctggttggagttctcactGGTTGGAGATCGGTCTATGCTGCTggggatggccccacatggacagcctgaagatcattgggattgctggggatggtgtcgcttgggggccgtggagatggcttggggatctcatatggggaattgtactgtgatggcttgggactgcgattgtcACGAGCAGCGGCACTGTAATGAAATTActggttacacagttgcactatttgtccatgtagtacacagttatagaagggttttatttaacactatctgttatcacccagatgaggatggattcccttttgagtctggttcctctcaatttttcttcctcatgttgtctcagggagtttttccttgccacagtcacctctggcttgctcattagggataaattcacacatttacaatttatatcctgaatgtatttatttctgtaaagctgctttgtgagagtgtccattgttaaaagtgc
>XM_026941400.2
AACAATTAAGGTCATGTATGAATAGTGTAGCAGCTAGTCTGCTAAGTAGCTGGTAGTCGTTTTGAAAAGTGAGTTGAGAGATTTAATAAATATGAGCAAAATAATTTGTCGTCGAGTTTTTGCGAATGAAGTAGTAACACCTCACTGACACAGCAGGTTTCTCTCTTCCCGCTCACTCCATCTCCACTATGGTGCGTCACAGCAAGCTTCAGAAACAGGTGTTATCTCTGTACCGTCAGTTCCTGCGTGCTGGACAGGACAAACCCGGTTTTTTACCCAGAATACGGGAAGAATTTCGCACAAACGCCACCATCCAAAAGACAGATGTGATGCATATAGAATATTTATGTCGACGAGCCCAGAGGCAACTGGAGCAACTTCGAGATGTGAACACCAAACAGCTGGGTTTCTTCAGCAAGACCAAGGAGGATAgctgatatatttatatgtttccAATATATAtatcctgaccatcacaccaatatgtgggtcttccccaaactgttgccacaaagttggaagcacacaattgtatag

Function

symbol description
sdhaf1 Predicted to be involved in mitochondrial respiratory chain complex II assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in mitochondrial complex II deficiency. Orthologous to human SDHAF1 (succinate dehydrogenase complex assembly factor 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283816 True 2065 lncRNA 0.44 2 12993977 12996622
XM_026941400.2 False 537 mRNA 0.43 2 12993957 12995074

Neighbor

gene id symbol gene type direction distance location
qpctlb qpctl,LOC108439624 coding upstream 1538 12980527 ~ 12992419 (+)
LOC113543048 LOC108278520 coding upstream 32858 12952293 ~ 12961099 (+)
itpkca LOC108279338 coding upstream 43955 12937291 ~ 12950002 (+)
ccdc61 ccdc61,LOC107589261,LOC107681161 coding upstream 58408 12923777 ~ 12935549 (+)
lifrb NA coding upstream 71712 12896946 ~ 12922245 (+)
LOC113543386 LOC108278432,LOC108439623,LOC107708511,LOC107589263,LOC107703554 coding downstream 10779 13007401 ~ 13009358 (+)
bod1 LOC108278584,LOC108441629,LOC107581912,LOC107661728,LOC107713186,LOC107587245,LOC107662284 coding downstream 280919 13277541 ~ 13285039 (+)
stc2b stc2b,LOC108278584,LOC107713187,LOC107587244,LOC107581911,LOC107661727,LOC107727250 coding downstream 304368 13300990 ~ 13306816 (+)
map4k6 map4k6,LOC108278980,LOC108431883 coding downstream 701794 13698416 ~ 13727720 (+)
zgc:110222 LOC108278982 coding downstream 733077 13729699 ~ 13732311 (+)
G239823 NA non-coding upstream 98529 12888353 ~ 12895428 (+)
G239805 NA non-coding upstream 164921 12827200 ~ 12829036 (+)
G239804 NA non-coding upstream 167051 12826622 ~ 12826906 (+)
G239646 NA non-coding upstream 347156 12645728 ~ 12646801 (+)
G239565 NA non-coding upstream 568520 12421688 ~ 12425437 (+)
G239935 NA non-coding downstream 21714 13018336 ~ 13319694 (+)
LOC117599121 NA non-coding downstream 159184 13155806 ~ 13156412 (+)
G239962 NA non-coding downstream 220458 13217080 ~ 13220925 (+)
G240052 NA non-coding downstream 364476 13361098 ~ 13362499 (+)
G240089 NA non-coding downstream 474943 13471565 ~ 13479955 (+)
G239282 NA other upstream 1145240 11838040 ~ 11848717 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 2252577 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 2299518 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 2416525 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 3427844 9488179 ~ 9566113 (+)
rtn2b rtn2,rtn2b other downstream 24645 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 384234 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 1436955 14433577 ~ 14534213 (+)
G240839 NA other downstream 1458345 14454967 ~ 14456634 (+)
G241254 NA other downstream 2468331 15464953 ~ 15465303 (+)

Expression


Co-expression Network