LOC113543386 (LOC108278432,LOC108439623,LOC107708511,LOC107589263,LOC107703554)


Basic Information

Item Value
gene id LOC113543386
gene name LOC108278432,LOC108439623,LOC107708511,LOC107589263,LOC107703554
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 13007401 ~ 13009358 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941524.2
ATGCCTCGCAGGCCGGATGTCAGCAGCAGCTGTTGCTTCCCACTGCACTTGAATGAGGACAATGCTCGCTTTGGCCTTTTGGCGGCGCTCATCCTGCTGTACCTGCTCTGTGGGGCGCTGGTTTTCTCTGCCCTCGAGCGTCCATCCGAGCTGCGGGCGCACCAGCGCTGGGAGGAACAGCTGGCTAACTTCACCCGGCAGCACAGGCTGAGTGTGGACAGCCTGCAGGCTTTGCTGAGGCACTATGAGGAGGCCTTCGTCACAGGCATCCGTGTGGACGCTCTGAGACCTCGCTGGGACTTCTCCGGGGCTTTCTACTTTGTCGGTACCGTGGTTTCCACAATAGGTTTTGGAATGACCACACCTGTGACGATAGGCGGCAAAGTGTTTTTGATATTCTATGGACTCATTGGTTGTGCAGCGACCATCCTGTTTTTCAACCTCTTCCTGGAGCGCATCATCACCATGTTGGCGTACATCATGCGCTGGTGTCACGAGAGGCAGCTGAGGCGTGCCGGTGTGGGAGGAGAGGAGGCTCATAGCGAGGATGACAGCCTGGAAGGCTGGAAGCCCTCCGTCTACTACGTGATGCTCATCCTGGGGGTTGCGGCGCTGCTGATTGCCTGCTGCGCCTCAGCACTGTACTCCTCTATGGAAGACTGGGATTACTTTGACTCACTCTATTTCTGCTTCGTGGCCTTCAGCACCATTGGCTTTGGAGACTTAGTGAGTAGCCAGAGGGAGAGCTACAAGGTGCAGGAGGCTTACCGATTAGGGAACTGTCTTTTTATCCTCATGGGTGTCTGCTGCATCTACTcactttttaatgtcatttccaTCATCATAAAGCAGACCCTAAACTGGATCCTGGCGAAGCTGGACTGCAGCAGGTTGCAGTGTCCCTGCCGAGGACGTACCTACAGAAGGCAAGGCTCAGcatgctgctgttgctgccTCCCCAGCCAGCGGCGCAGCCAGCACCCCATAACCGGAAACCCTCGGCAGAGGGCACAGAAGCGCAATGCTGTACACCCAGCCCCCGCCAACGAGGCTGCGCGGAAGCAGCGCTTCACTAATGCATCAGTGGAAACAGTGTGTGATAGTGAGACTGATCCTGGCCTGGGGCCAGATGGAGGTTATCTCACAGGGCACAGACTCTCAGGAGAAATGATCTCTGTCAATGACTTTATGGCCAACAAGGTTTCTCTGGCCATTCTGCAGAAGCAGCTCTCAGAGACCGCCCACGGAAACCCAAGACAGAGCCATGTTCGGCAGAACGGCTTTTCTGTTGGAGTGGGAGCCTTCGCCATTATGAATAACCGCCTACAAGAGACGAGTGTCGACAGGTAGTCATAGTGGATCATAGCGTCTAGCATCATCCAGTGTATTTTCTAAAATGAGCAGAATAGGAAAGAGAAACGTTTAAAAACTGCTAGAGGTTAGAGGAGTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941524.2 True 1452 mRNA 0.55 2 13007401 13009358

Neighbor

gene id symbol gene type direction distance location
qpctlb qpctl,LOC108439624 coding upstream 14982 12980527 ~ 12992419 (+)
LOC113543048 LOC108278520 coding upstream 46302 12952293 ~ 12961099 (+)
itpkca LOC108279338 coding upstream 57399 12937291 ~ 12950002 (+)
ccdc61 ccdc61,LOC107589261,LOC107681161 coding upstream 71852 12923777 ~ 12935549 (+)
lifrb NA coding upstream 85156 12896946 ~ 12922245 (+)
bod1 LOC108278584,LOC108441629,LOC107581912,LOC107661728,LOC107713186,LOC107587245,LOC107662284 coding downstream 268183 13277541 ~ 13285039 (+)
stc2b stc2b,LOC108278584,LOC107713187,LOC107587244,LOC107581911,LOC107661727,LOC107727250 coding downstream 291632 13300990 ~ 13306816 (+)
map4k6 map4k6,LOC108278980,LOC108431883 coding downstream 689058 13698416 ~ 13727720 (+)
zgc:110222 LOC108278982 coding downstream 720341 13729699 ~ 13732311 (+)
mtmr1b LOC108431882,LOC107727267,LOC107713197,LOC107661737 coding downstream 726157 13735515 ~ 13767558 (+)
G239823 NA non-coding upstream 111973 12888353 ~ 12895428 (+)
G239805 NA non-coding upstream 178365 12827200 ~ 12829036 (+)
G239804 NA non-coding upstream 180495 12826622 ~ 12826906 (+)
G239646 NA non-coding upstream 360600 12645728 ~ 12646801 (+)
G239565 NA non-coding upstream 581964 12421688 ~ 12425437 (+)
G239935 NA non-coding downstream 8978 13018336 ~ 13319694 (+)
LOC117599121 NA non-coding downstream 146448 13155806 ~ 13156412 (+)
G239962 NA non-coding downstream 207722 13217080 ~ 13220925 (+)
G240052 NA non-coding downstream 351740 13361098 ~ 13362499 (+)
G240089 NA non-coding downstream 462207 13471565 ~ 13479955 (+)
sdhaf1 sdhaf1,LOC102800057 other upstream 10779 12993957 ~ 12996622 (+)
G239282 NA other upstream 1158684 11838040 ~ 11848717 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 2266021 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 2312962 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 2429969 10571869 ~ 10577432 (+)
rtn2b rtn2,rtn2b other downstream 11909 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 371498 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 1424219 14433577 ~ 14534213 (+)
G240839 NA other downstream 1445609 14454967 ~ 14456634 (+)
G241254 NA other downstream 2455595 15464953 ~ 15465303 (+)

Expression


Co-expression Network