G239823


Basic Information

Item Value
gene id G239823
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12888353 ~ 12895428 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU283704
CAAAATTCAAGCAAATTCAGTGCAATTTACTGCTGCCACATTCATCCAAAGTGACTTGGGCGcattcacacctattagtctgtGTGccgagtctgaatcagagtgagGTTCATACTGCtggtttgtttgctgttttcaACGAACTTTAATGAACCAAAAAGCAAATAGAAAATGTCATCCGAGGGGAGTGTTGGGCTGAAGCCTTCCCCGTAAAACTCATTCGTTGATCAGAAATACAGGTGACAAAAAAGTGAACAAACATTTACCCATTACACACAGAAGTCACAAGCCAGTGCAAAGTAAATGATAAAGtacttatataaataactagtttaaaacagtTCTGATATCACATccaatgtttattttctctttgtgtttggCAAACCAAATCTACAGAACATGTGGCATTTCTGCGGCTCTATAGCTCTTTATTCAGTTCCTGCAGTCGGGTCAGTTCAGAGTCCGATCTCTTTCTCACTAGAGTTCACTTGGACCTTGCTCTGATGCTCTCAGACCCGAGTGTAATTCTCACCTGTGTAAAGAACTGGCCTTAAGGGAGAACACATTAGGGGGCTGTTCAAACTGATTAAACACTGCAAATGTGAACGTGCCCTTTAAATTGAGCAGTCATGGGCAGAAGGTTTTGTCTAAGGACCTAACGGCTGCTTTCTGGCTTCCAATCTTGCTAACTGAGCCACCTGTTGTTTTAGGACGTTCCATCTCAGTTTTGTGAGGAGACTCAGTCACAGTAAACTTTCATACAGGTCAGACATTCAGGATGCACAGCAACAAACGATCAGCAATTTAACAATGACTAGATGAtggatttgtttgcttttggggaaaaaagaagcaggtgaaaaaaaacaccatctaCTGAAGCTTCACTGCTTCACTCTGAGGAGAAGGTTAAGGGTTTTTCCCAAATCTCACTTCTGGTCACTGTCTTGGAACATTTCTGTCCACTATCATCAGATGTAATCAATAATAAGTGCATGTTTAGTGTCcaaattttgtttcattatttttgcattatagCGATGAGGCGAATGTAGCTAAAGGAGGTCCATAAGTACCAAATAGCATCATGCAGACTTGCTACTCAGCCGTGACCCTGACTGCGATTGAAAGATaaacaacaggaaacacaatTAAATTTGTATATACTAATTGACTAATGTACAGCAGAGAGAAGTGTATGCatgtcttttttcttcattcccTCTCCCACTAAATCCTTCAAAAAAACCCAACAGTTCAAAACCATCTTCCAGCTCTACTCTCTTCCAAAAGTATAAAATGGTCTGATACATTTCTATTGATTAACTTTAGCTGAAAACAATTAGACTTTTCTGACACGCACCTACACTCTTAAGGAACTTTCCATTCTAGCACCCGTAAAGTGGTTCTATCAGTTTGTCACACTGgcagaacccttaaaggttctatgtgtCCTTCAACATGGAGTTTTTCTGTGTAAAAGGGTGCCAAGGAAGATAAAAGAACTCTTAACTAACCAAAAAACCCTCAAGTTTTGTCTGAGTGTTTTTTGGAATAATAAGCTATAatgtgagatgatgatgatgatgatgatgatgatgcagatgATGCAGCGTTTGCTAGGTTAACTCCAATGCTTCCCCACCATCTGAACATCTTTAATCATTACTTTCAATGCTCTGAGCTTTTTGCTTTAAAGGGATAGTTTGGCAAACATAATGGATGAGCCATGAGACATGTTTGGCCCCAAAGTTTACTATAGTTTTGGTCATGGACAGAATATGCAATATAAAAATTCATAATGGAACTATGTACACTTCTGTTTTCAAACTTTGTGACACAGGGCTTAGGGAAATTATTGCATAGTTGTCCAAGATGGTCACCTCCATAACAGTTCTGTGTTCAGCTACACTGTGaagttttgttcatatttatagaCTGCAGTAAgactgctttcacacttggcaTTTGTTTCCTCAAACACTAGTGTACGTTTTACGTGTAATCCTATGGATACGTGGCTGCCTTTAAAAAGCATGGCccctgccatttttttttttttggtcacagtgAAGCTTCCAAACAATGCCATGTGACATCCAGTCAGGTCAGGAGTACGGGGGTAAGcgagataaataaaataaaacatggaggacaaagtgcaGATGAAAAAATGagtcttgttagtgagtgaaTGTGAGATTTATGACACGTTGGATCAAAAATAGTTTGTTGCCAATGTAGGTGAAAATAACAGCGTATTTTTTGGGACATTCACCGGTATATGATATGACGTCCAATGTAACTGTGTTGCATGCAGTCAAGTTACACAAAcagctcaaattctcttgaATTTCTGCCTCTGAAACTACAGACAAACAACCTGCTCATCACCAGGGTTACACCAGGGTTACAGCTGATCTAGAGAGCAAGCTTGGGCTTGTTAGTGAGAAAATACTACCTAGACCTGGTGTCAtcatggttacagtgtgttgCATGAGTCACTTTTTTTCCATATCAGCACAAAAGGCACTGCAGCtggtgtgaaagcagccttagTCCTTTTAtgtcctaaaaaaaaagtgggtgtGGTTTGAGGCTTGTATTTACACCGAATATTTGTGCAAAGTGTAAAGAAGCAAAAGTCAGACAACCAATATGTCTTGATATtgatcttttttattattattattattattattattcctttaaAGCAGGTCCACAGCATTTGTCCTGGCCATTACATAAGCATGATGCAATAAATAACCCACTCATGATGAAGCCACAGCAATGCCTTTTCTCATTCTAATCTTTAAGCTGTTCATCAGATAAAGGTTGATCGTTTATTCGGTTTAGCCTTTATCTGTAATTATAAATTTGAGGTATTGAGATATACTTTTGTTCAATGTGCCTGTTGATtccaaataaattattttggtGTCATAATTGGTTTTATTGAAACGGAGTGATGGATTTGTTTGCTTCTTCTTGGCTGGACCAGTCACGCTATTTAGGCAGCTTTAATTATTTCGccttatatgtattttttgtattagcATTAGACTTAATGAAATTGTcacagcttttttatttattctagaTCCTAATAAATCCGCATCTTTATCTGCCTTGGCTTTTCCCACAAACAcaaggttttattattattattattattattattattattattattattg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU283704 True 3200 lncRNA 0.38 2 12888353 12895428

Neighbor

gene id symbol gene type direction distance location
rictorb rictor,LOC107681152,LOC107589259 coding upstream 1273 12849664 ~ 12887080 (+)
ndr1 LOC108279289 coding upstream 174673 12710989 ~ 12713680 (+)
trnaf-gaa_27 NA coding upstream 197039 12691242 ~ 12691314 (+)
htr1ab htr1a,LOC107591737,LOC107681135,LOC107703504,LOC107708525,LOC107589255,LOC107706510,LOC108439627 coding upstream 229134 12657593 ~ 12659219 (+)
c7b c7 coding upstream 270817 12602139 ~ 12617536 (+)
lifrb NA coding downstream 1518 12896946 ~ 12922245 (+)
ccdc61 ccdc61,LOC107589261,LOC107681161 coding downstream 28349 12923777 ~ 12935549 (+)
itpkca LOC108279338 coding downstream 41863 12937291 ~ 12950002 (+)
LOC113543048 LOC108278520 coding downstream 56865 12952293 ~ 12961099 (+)
qpctlb qpctl,LOC108439624 coding downstream 85099 12980527 ~ 12992419 (+)
G239805 NA non-coding upstream 59317 12827200 ~ 12829036 (+)
G239804 NA non-coding upstream 61447 12826622 ~ 12826906 (+)
G239646 NA non-coding upstream 241552 12645728 ~ 12646801 (+)
G239565 NA non-coding upstream 462916 12421688 ~ 12425437 (+)
G239476 NA non-coding upstream 610208 12277711 ~ 12278145 (+)
G239935 NA non-coding downstream 122908 13018336 ~ 13319694 (+)
LOC117599121 NA non-coding downstream 260378 13155806 ~ 13156412 (+)
G239962 NA non-coding downstream 321652 13217080 ~ 13220925 (+)
G240052 NA non-coding downstream 465670 13361098 ~ 13362499 (+)
G240089 NA non-coding downstream 576137 13471565 ~ 13479955 (+)
G239282 NA other upstream 1039636 11838040 ~ 11848717 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 2146973 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 2193914 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 2310921 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 3322240 9488179 ~ 9566113 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 98529 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 125839 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 485428 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 1538149 14433577 ~ 14534213 (+)
G240839 NA other downstream 1559539 14454967 ~ 14456634 (+)

Expression


Co-expression Network