ndr1 (LOC108279289)


Basic Information

Item Value
gene id ndr1
gene name LOC108279289
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12710989 ~ 12713680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941396.2
CGGCGCTGTAGTTTCTGTAAGTTTTGAAAGGAGCTTAATTAAAGAGGCTCTGCATCAGCGAACCCAAGTCATTCCCTCCGAGGAGCGAGCAGAGAGCAAGACCAGACCGCGGAGCTGTCTGTCCTCGTTCTCTGTCCTCTGCCTTATTCCTGCTGGTATTACTATGAAACACTTGGTGTGCGGGATTTTGTGCGTGGCGCTGTGGGTGCGCTCGGTCTCCGCCACTGCGCTCGTCAGCAGGAAGCGCGGATCCGCTAAAGGACCGTATCCGCTCTACATGATGCACCTCTACCGCACTTTACTGGCCGGAGACGCAAAGAAATTAGCGGGGACTTCGAGCGCGGGGATCGGATACGAACATCCATCTCTGCACCACTCCGACTCGGTGCTCAGCCTCGTCGCCAAAAgttgcTACCAGGTGGGTGACAAGTGGGCCGTCACGTTTGACATGTCCTCCATCTCGGCGAGCGACGATGTGCAGCGCTCAGAGCTGCGCCTGCGCCTCCCGGACTTCTCCGCCTCTGAGAACCCCGTGGTGGACATCTACCACGCTCCCAAAGGCGCCCAGGAGCGTCTTCACCTGGGTCGCATTGACGCCGCGTCGAGCACGTCTCCATCCTCACACTCCTCTTGGAGAGTCCTGAATATCACCCAGCTGCTGAAGTACTGGCTGCACCAGGGGGGTCTGCCTCCCACCCAGGTTCACTGGGACGAAGGGGCACCCCAGGACCTTGAGAATGCCATCCAGCATCCGACAGCCAACAGCGTCATGATGGTGGTTTACTCCAAGCAGGTGAGGACAGAAGCGTCTACGCTGATCCGCACAGCTGAGCACTCCAAGTATGTGGCTCAGGATCGGGCGCTGTCTGAGCCCGTGGCCCGGAGACACAAACGCAACCACCGGGCGCACAAGAGGGTGAGCGAGGCAGCAGGGGACAGCGCGATCCCAGCACTCACACAAGTCGAGGGTGAAAAGAAGACCCTGTGCCGGAAGGTGGACATGTGGGTGGACTTTGACCAGATTGGCTGGAGTGAGTGGATTATTTATCCAAAGAGATACAACGCATACCGCTGTGAAGGTGGCTGCCCTACGCCGGTGGACGAGTCGTTCACTCCGACGAATCACGCATACATGCAGAGCCTGTTGAAGCTGCACCAACCGGACCGCGTCCCGTGTCCATCCTGCGTACCTACACGCCTGGCTCCTCTCTCCATGCTCTACTATGAGAATGGGAAGATGGTGATGAGGCATCACGAAGGCATGGTGGCGGAGGCATGCGGCTGCCACTGATCTGTCTCTCAAACACCGAGCCAAATCGACTTCAGCACTTACGGCGTCTTTACCTGCCCATCCCCAACAACAAGAGACTGCCAGAGAACTTTAGCACTAAGCAGAGAGACAATGTAGAAATGTGGAcaatgcacaaaaacatttcttcACCATTGGTCAGAAACTTAGCCCTTTCATACACCAGTGATGGACGATTCGTTCCTTTTAAATGATTCAGTTAAGTGAATCGATTCTCAGGGATGCATGaaccattttttaaagattgacATTTGATATTGTATCATGCTCAGGGTTTTAAGACTAGCCATTCTGACTGGCTAATAAATTTATAGATTCACTTGAACAGCTAGTTCAAAAGAATCGAATCAGTTAAGTGAATCACTACACTGTGTTATACTTAGAATAAATAACTGCTCCTATGAGTTAGATACTCAACAGCTAGATATTATCTCCAGTGCCTTACTTTTTCGTGTTTATAAACTGTATAATGTTTGTACATATGGGATCTgacaaatgtaatgaaatatattttatgcatatttagtAAA

Function

NR:

description
nodal homolog

GO:

id name namespace
GO:0045743 positive regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0043010 camera-type eye development biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0021854 hypothalamus development biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0008595 anterior/posterior axis specification, embryo biological_process
GO:0048382 mesendoderm development biological_process
GO:0060061 Spemann organizer formation biological_process

KEGG:

id description
K04666 NODAL; nodal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941396.2 True 1839 mRNA 0.52 3 12710989 12713680

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_27 NA coding upstream 19675 12691242 ~ 12691314 (+)
htr1ab htr1a,LOC107591737,LOC107681135,LOC107703504,LOC107708525,LOC107589255,LOC107706510,LOC108439627 coding upstream 51770 12657593 ~ 12659219 (+)
c7b c7 coding upstream 93453 12602139 ~ 12617536 (+)
LOC113543337 LOC108278539,LOC107589289,LOC107591738,LOC107706448,LOC107708506,LOC107681111 coding upstream 155322 12554429 ~ 12555667 (+)
efna5a LOC108279071,LOC108439616,LOC106563326,LOC106566624 coding upstream 256012 12392751 ~ 12454977 (+)
rictorb rictor,LOC107681152,LOC107589259 coding downstream 135984 12849664 ~ 12887080 (+)
lifrb NA coding downstream 183266 12896946 ~ 12922245 (+)
ccdc61 ccdc61,LOC107589261,LOC107681161 coding downstream 210097 12923777 ~ 12935549 (+)
itpkca LOC108279338 coding downstream 223611 12937291 ~ 12950002 (+)
LOC113543048 LOC108278520 coding downstream 238613 12952293 ~ 12961099 (+)
G239646 NA non-coding upstream 64188 12645728 ~ 12646801 (+)
G239565 NA non-coding upstream 285552 12421688 ~ 12425437 (+)
G239476 NA non-coding upstream 432844 12277711 ~ 12278145 (+)
G239475 NA non-coding upstream 436243 12274524 ~ 12274746 (+)
G239458 LOC108279218,LOC108436973,LOC107681097,LOC107706495 non-coding upstream 488962 12219783 ~ 12222027 (+)
G239804 NA non-coding downstream 112942 12826622 ~ 12826906 (+)
G239805 NA non-coding downstream 113520 12827200 ~ 12829036 (+)
G239823 NA non-coding downstream 174673 12888353 ~ 12895428 (+)
G239935 NA non-coding downstream 304656 13018336 ~ 13319694 (+)
LOC117599121 NA non-coding downstream 442126 13155806 ~ 13156412 (+)
G239282 NA other upstream 862272 11838040 ~ 11848717 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 1969609 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 2016550 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 2133557 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 3144876 9488179 ~ 9566113 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 280277 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 307587 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 667176 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 1719897 14433577 ~ 14534213 (+)
G240839 NA other downstream 1741287 14454967 ~ 14456634 (+)

Expression


Co-expression Network