efna5a (LOC108279071,LOC108439616,LOC106563326,LOC106566624)


Basic Information

Item Value
gene id efna5a
gene name LOC108279071,LOC108439616,LOC106563326,LOC106566624
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12392751 ~ 12454977 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026940932.2
tgCGGCTTTCACGCGCTCGGCGCTTCACTCGGATCAGCTCCGCTGCTGTGCGCCACGCAGTTTCTCTGTCCCTCCGCTCCGGTTCAGTGACTTTACGCTTTTCAGGATCTGTAAATCCAGTCTGCTCAGTGCGATTCCGCGCTCTTTCAGCCGTTTTTCAGCGCGgtgcgtgttgtgtgtttgcgGGTTTCTGGTTTGTTTCTCGTTGTCTGTTCAGTTTGGAGGCGACGCGGAGAACCAAACTGCGCTTGAAGCAGGACCAGAGCACCGggagcagctctctctctctctcacacacacacactctgccctCGTGAtttcctgcatgtgtgtgtgtgtttgttcatgcaTGCACGGATTTGCCATGTTTTAATTTGCAACTTTCCTTCTCTCACAGTGTGAGAAGGTGCGCAGTACAATCGTTTCCTCGCGTGTAAGACAGTTTGCCGGTGGCGCAGGAACGAGGAAGTGTCCTGTAAAGGATTGTAAGAGGGACTGTGAACACTGGTGATTTGGGTGGATTTTGTAGTCTGTTTCTCAGAAGGGATGCGCTTCCACTCCGCCCGGACTACAGCCTGAGAGCCGGCACGCGCAGTCGctgcagcagagctttaataAACTCTACATTCCCACAACTCTCCTTTGGCACTGTAACAGCTCTTGGACATCCTCAGAGTGGGAACAGTTCATGCACAGACCTGTGGGAGTCTTCACTAAGGAAAGGGTTGATCACATGTGAGTTGGCTGCcggtgtgttttgttttgtcaccCGGCGCTCGTGCCCCGGACAGACCCCGGTACCGCGTGCGTGGATCAGGACTGAGCTGCGCGCTTGAGGCTGCTGGAGATGGCTCCGGTGGGGATGCTGCTGATCGGGGCTGTGTTAGTGTGGGTGTCGGTGCTGGGTGAAGAACCTGCTGCTAAAGCCGTAGCCGACCGATACGCCGTCTACTGGAACCGCACGAATCCCCGATTTTACCGAGGTGACTATCACCTTGATGTGTGCATCAATGACTACCTGGACGTCTACTGTCCCCACTACATGGACTCTGTGCCGGAGGCGAGGACCGAGCGCTACATGCTGTACATGGTCAACTACGATGGCTACAGCACCTGCGACCACACAGCGACGGGCTTCAAACGCTGGGAGTGCAATCGGCCCTACTCTCCCAACGGGCCTCTCAAGTTCTCTGAGAAGTTTCAGCTCTTCACACCATTCTCGCTGGGCTTTGAGTTCCGACCAGGCAGAGAATACTACTATATATCCTCTACAGTTGCTGAGAATGGGAGAAAGACCTGCCTGAGGCTGAAAGTTTTCGTCAGACCAGCAAACAACTGCGTGAAAACCGTCAGCGTTCATGACCGGGTCTTTGACGTTAATGACAGTAACTCAATAGAGCCGAGAGACGATACGAGCCACGAATCGGCCGAGCCATCCCGAGGGGATGTCAATTCTGCCGGACGTGTACGTATGGCTGGCCTCCCGCTAGCCTCAGCCCTGATCATCTTCATCTCTCGCATATCATTATAGcggcttatgtgtgtgtgggtgcgatAACAGGTCCCAATCTTAACACAGAGGAGGACTCTTAAAagagcacttttttaaaaagtagacaTCAGAGGTCCTCATTATCTCCGCTGAGATTCAGAACGTGTTCCTCTAACGAGAAGACACCAGAACTCAGTCAATGAGGGTGGAATCTTCTCATCCGGGATGCATTACAGGATGGATCTTGGTGGATATCCGTACACTCCCCAGATACATGTATATGCATACACAGAACTTCTTTCATCAAGCAATGACTTACCTTAAAATGGAAGGTGGAAAAGACATATATActcatttgttgttgttttttggttttttttttttttttttttggacattatttctgtaaaaagcAATGGCGGACTCCCATCGACATGTTTATGAGCCAGGTGTCTGGAAACATGGGAAACATTTTGGACACAGCTGTGTACAGGACTGAGGGAGAACTGGTTTCAGAGTGTTcttctatcaaaaaaaaaagaaagagatcaTTTTTAATGGGGCAAGTCTTTACCTGAGGactttattgttgtttttaaggAGTTTtcttatataaaaagaaataagcaCTCGTCTGT

Function

NR:

description
PREDICTED: ephrin-A5b-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026940932.2 True 2130 mRNA 0.50 5 12392751 12454977

Neighbor

gene id symbol gene type direction distance location
zgc:103482 LOC108279219 coding upstream 106262 12278213 ~ 12286489 (+)
LOC113543076 LOC108279221,LOC107681190,LOC107589249,LOC107706446,LOC107708534,LOC107703580,LOC108436651 coding upstream 119199 12272594 ~ 12273552 (+)
pde6b pde6b,LOC108279216,LOC108436964,LOC107708533,LOC107706500,LOC107681163 coding upstream 131841 12247045 ~ 12260910 (+)
si:dkey-247m21.3 LOC108278505,LOC108436681,LOC105014741,LOC106568256 coding upstream 192539 12151422 ~ 12200212 (+)
tnksa tnksa,tnks,LOC108279024,LOC108436993,LOC107706493,LOC107681059,LOC107591704 coding upstream 310486 11973911 ~ 12082265 (+)
LOC113543337 LOC108278539,LOC107589289,LOC107591738,LOC107706448,LOC107708506,LOC107681111 coding downstream 99452 12554429 ~ 12555667 (+)
c7b c7 coding downstream 147162 12602139 ~ 12617536 (+)
htr1ab htr1a,LOC107591737,LOC107681135,LOC107703504,LOC107708525,LOC107589255,LOC107706510,LOC108439627 coding downstream 202616 12657593 ~ 12659219 (+)
trnaf-gaa_27 NA coding downstream 236265 12691242 ~ 12691314 (+)
ndr1 LOC108279289 coding downstream 256012 12710989 ~ 12713680 (+)
G239476 NA non-coding upstream 114606 12277711 ~ 12278145 (+)
G239475 NA non-coding upstream 118005 12274524 ~ 12274746 (+)
G239458 LOC108279218,LOC108436973,LOC107681097,LOC107706495 non-coding upstream 170724 12219783 ~ 12222027 (+)
G239455 LOC108436675,LOC108278439 non-coding upstream 176931 12210555 ~ 12215820 (+)
G239366 NA non-coding upstream 305858 12009562 ~ 12086893 (+)
G239646 NA non-coding downstream 190751 12645728 ~ 12646801 (+)
G239804 NA non-coding downstream 371645 12826622 ~ 12826906 (+)
G239805 NA non-coding downstream 372223 12827200 ~ 12829036 (+)
G239823 NA non-coding downstream 433376 12888353 ~ 12895428 (+)
G239935 NA non-coding downstream 563359 13018336 ~ 13319694 (+)
G239282 NA other upstream 544034 11838040 ~ 11848717 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 1651371 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 1698312 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 1815319 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 2826638 9488179 ~ 9566113 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 538980 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 566290 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 925879 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 1978600 14433577 ~ 14534213 (+)
G240839 NA other downstream 1999990 14454967 ~ 14456634 (+)

Expression


Co-expression Network