LOC113543337 (LOC108278539,LOC107589289,LOC107591738,LOC107706448,LOC107708506,LOC107681111)


Basic Information

Item Value
gene id LOC113543337
gene name LOC108278539,LOC107589289,LOC107591738,LOC107706448,LOC107708506,LOC107681111
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12554429 ~ 12555667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941458.2
GGCTCTGATTCAGCACCAGTCTTTTACGGACTATCCTGATCTCTGCATCTCTACTGTGCTCGTCTCGGAACGACTCCTAACACCAGCATCATGACTTTTGAGGAAGTTGCCATCCAGAAGCCCAGCGAGAGAGCTCAGGGCACCGGCAAAGCACTGGAGGAGCTTTTGGTGTCTGCAAAGACGAACGAGTGTCTCACCATCGGCGTGTATGAATCTGCTAAAGTGATGAATGTTGATCCTGACAGCGTGTCCTTCTGCGTCCTGGCCATGGATGAAGAGTTCGAGTGCGACATCGCGCTCCAAATCCACTTCACTCTCATCCAGGCTTTCTGCTTCGATAACGACATCAGCATCGTGAGAGTGAACGACGTGCAACGTCTGGGTGAAATCGTCGGTGCTAAAGATCAAACCGAGGACTGTCACTGCCTTCTTATCACGaGTCCAGCTGATGGTTCGTGGGAAGACCCAGCTCTGGAGAAGCTGCACATGTTCTGCGAAGAAAGCCGCCGCTCCAACGACTGGCTTCCAGAGATCACTCTGCCAGCTCGCTGATCTGCTGATGGGACTCTTCTCACACGAGAGGCTGTTAACCCTTAATGGAAATACATGCATCCTTTGAAtaaaggatgatgatgatgatgatgtatctTCACATCCCTGGACGCTTCTGAGGAGGCTCTAATGCAGTCCAGGCAGCGCGGGGCATGCAGGCCCGAAGTGGCCTTTCGCCTCACGGTTCCGTCGCTTCTCGTCCCGTCCATGCCAAGATGGTCCTCCTTCTTTATGTGAACGAGGCCGGGCATGCCACGAGAGCGACCCAGCGGCCCTCATTCTTTGTGCGGATGAGGTTtggagaggaaggagaaagcGAGTTTGTGCTCCACAGCGCAAATTTCGCATCGTGCGTTAGACACGCAGAGGACGCGGTGGTGCGTCGTAGCGACGTTTTTGAGAAAAATGGACTTAACATCAGggacattttttctttaaaaaaaa

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941458.2 True 996 mRNA 0.52 3 12554429 12555667

Neighbor

gene id symbol gene type direction distance location
efna5a LOC108279071,LOC108439616,LOC106563326,LOC106566624 coding upstream 99452 12392751 ~ 12454977 (+)
zgc:103482 LOC108279219 coding upstream 267940 12278213 ~ 12286489 (+)
LOC113543076 LOC108279221,LOC107681190,LOC107589249,LOC107706446,LOC107708534,LOC107703580,LOC108436651 coding upstream 280877 12272594 ~ 12273552 (+)
pde6b pde6b,LOC108279216,LOC108436964,LOC107708533,LOC107706500,LOC107681163 coding upstream 293519 12247045 ~ 12260910 (+)
si:dkey-247m21.3 LOC108278505,LOC108436681,LOC105014741,LOC106568256 coding upstream 354217 12151422 ~ 12200212 (+)
c7b c7 coding downstream 46472 12602139 ~ 12617536 (+)
htr1ab htr1a,LOC107591737,LOC107681135,LOC107703504,LOC107708525,LOC107589255,LOC107706510,LOC108439627 coding downstream 101926 12657593 ~ 12659219 (+)
trnaf-gaa_27 NA coding downstream 135575 12691242 ~ 12691314 (+)
ndr1 LOC108279289 coding downstream 155322 12710989 ~ 12713680 (+)
rictorb rictor,LOC107681152,LOC107589259 coding downstream 293997 12849664 ~ 12887080 (+)
G239565 NA non-coding upstream 128992 12421688 ~ 12425437 (+)
G239476 NA non-coding upstream 276284 12277711 ~ 12278145 (+)
G239475 NA non-coding upstream 279683 12274524 ~ 12274746 (+)
G239458 LOC108279218,LOC108436973,LOC107681097,LOC107706495 non-coding upstream 332402 12219783 ~ 12222027 (+)
G239455 LOC108436675,LOC108278439 non-coding upstream 338609 12210555 ~ 12215820 (+)
G239646 NA non-coding downstream 90061 12645728 ~ 12646801 (+)
G239804 NA non-coding downstream 270955 12826622 ~ 12826906 (+)
G239805 NA non-coding downstream 271533 12827200 ~ 12829036 (+)
G239823 NA non-coding downstream 332686 12888353 ~ 12895428 (+)
G239935 NA non-coding downstream 462669 13018336 ~ 13319694 (+)
G239282 NA other upstream 705712 11838040 ~ 11848717 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 1813049 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 1859990 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 1976997 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 2988316 9488179 ~ 9566113 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 438290 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 465600 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 825189 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 1877910 14433577 ~ 14534213 (+)
G240839 NA other downstream 1899300 14454967 ~ 14456634 (+)

Expression


Co-expression Network