LOC113543406


Basic Information

Item Value
gene id LOC113543406
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11296010 ~ 11296078 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404414.1
TTGCAATGATGACCATCTTAGGACACCTTTGGAATTCAACATGAAAACAACAATATTAATCTGAGCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404414.1 True 69 ncRNA 0.35 1 11296010 11296078

Neighbor

gene id symbol gene type direction distance location
LOC113543407 NA coding upstream 1033 11294910 ~ 11294977 (+)
LOC113543402 NA coding upstream 1850 11294094 ~ 11294160 (+)
nefla LOC108279243 coding upstream 42454 11251011 ~ 11253556 (+)
crkl crkl,LOC107700778,LOC107722822,LOC107591716,LOC106566436 coding upstream 76157 11204018 ~ 11219853 (+)
si:ch211-222n4.2 ccdc74b coding upstream 113018 11174854 ~ 11182992 (+)
LOC113543408 NA coding downstream 1263 11297341 ~ 11297407 (+)
nkx6.1 nkx6-1,nkx6.1,LOC107706438,LOC107700773 coding downstream 5573 11301651 ~ 11304846 (+)
abraxas1 fam175a coding downstream 169445 11465523 ~ 11471158 (+)
helq helq,LOC107681193,LOC107591711 coding downstream 181022 11477100 ~ 11496671 (+)
hpse hpse coding downstream 202074 11498152 ~ 11512603 (+)
G238987 NA non-coding upstream 87292 11139045 ~ 11208718 (+)
G238848 NA non-coding upstream 434396 10861354 ~ 10861614 (+)
G238818 sptan1 non-coding upstream 441755 10768826 ~ 10854255 (+)
G238830 NA non-coding upstream 507208 10785365 ~ 10788802 (+)
G238817 NA non-coding upstream 536476 10752817 ~ 10759534 (+)
G239085 NA non-coding downstream 153833 11449911 ~ 11451073 (+)
G239230 NA non-coding downstream 375511 11671589 ~ 11674445 (+)
G239231 NA non-coding downstream 413981 11710059 ~ 11742204 (+)
G239262 NA non-coding downstream 460720 11756798 ~ 11824929 (+)
G239286 nnt,LOC108437056,LOC107589270,LOC107681058,LOC107706486,LOC107750406 non-coding downstream 545337 11841415 ~ 11842334 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 554630 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 601571 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 718578 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 1729897 9488179 ~ 9566113 (+)
c1qb NA other upstream 1971142 9323196 ~ 9324868 (+)
G239282 NA other downstream 541962 11838040 ~ 11848717 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 1697879 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 1725189 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 2084778 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 3137499 14433577 ~ 14534213 (+)

Expression


Co-expression Network