LOC113543407


Basic Information

Item Value
gene id LOC113543407
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11294910 ~ 11294977 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404415.1
ctgctgtgatgaCTTCTTAGGACACCTTTGGATTAATGATGAAAAGAATCGAACGAATTCTGAGCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404415.1 True 68 ncRNA 0.41 1 11294910 11294977

Neighbor

gene id symbol gene type direction distance location
LOC113543402 NA coding upstream 750 11294094 ~ 11294160 (+)
nefla LOC108279243 coding upstream 41354 11251011 ~ 11253556 (+)
crkl crkl,LOC107700778,LOC107722822,LOC107591716,LOC106566436 coding upstream 75057 11204018 ~ 11219853 (+)
si:ch211-222n4.2 ccdc74b coding upstream 111918 11174854 ~ 11182992 (+)
odf2a odf2 coding upstream 125557 11154075 ~ 11169353 (+)
LOC113543406 NA coding downstream 1033 11296010 ~ 11296078 (+)
LOC113543408 NA coding downstream 2364 11297341 ~ 11297407 (+)
nkx6.1 nkx6-1,nkx6.1,LOC107706438,LOC107700773 coding downstream 6674 11301651 ~ 11304846 (+)
abraxas1 fam175a coding downstream 170546 11465523 ~ 11471158 (+)
helq helq,LOC107681193,LOC107591711 coding downstream 182123 11477100 ~ 11496671 (+)
G238987 NA non-coding upstream 86192 11139045 ~ 11208718 (+)
G238848 NA non-coding upstream 433296 10861354 ~ 10861614 (+)
G238818 sptan1 non-coding upstream 440655 10768826 ~ 10854255 (+)
G238830 NA non-coding upstream 506108 10785365 ~ 10788802 (+)
G238817 NA non-coding upstream 535376 10752817 ~ 10759534 (+)
G239085 NA non-coding downstream 154934 11449911 ~ 11451073 (+)
G239230 NA non-coding downstream 376612 11671589 ~ 11674445 (+)
G239231 NA non-coding downstream 415082 11710059 ~ 11742204 (+)
G239262 NA non-coding downstream 461821 11756798 ~ 11824929 (+)
G239286 nnt,LOC108437056,LOC107589270,LOC107681058,LOC107706486,LOC107750406 non-coding downstream 546438 11841415 ~ 11842334 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 553530 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 600471 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 717478 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 1728797 9488179 ~ 9566113 (+)
c1qb NA other upstream 1970042 9323196 ~ 9324868 (+)
G239282 NA other downstream 543063 11838040 ~ 11848717 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 1698980 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 1726290 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 2085879 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 3138600 14433577 ~ 14534213 (+)

Expression


Co-expression Network