nefla (LOC108279243)


Basic Information

Item Value
gene id nefla
gene name LOC108279243
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11251011 ~ 11253556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941155.2
TAAGCAGTTGGGACTGCAGCAGAGAGAGCAGTGTCTCAGTCTGCTAGCtgtgagaggaagaaagaggcAGAGCAGATTGTCCTTGAAGCCATGAGTGGCATCGGCTTTGATCCTTACTACACCTCCTCATACAAGCGCTGGTATGTGGAGAGTGCACCCCCACGTGTGGCGACACGGACCCGTTCCCGCACCGTGTACTCCAGCCACTCATCTCCGCTATCCTCGGCTCGGTTGCAGTACAGCTCCCCTGGGCGtgtctcatcctcctcctccttgctGCTGAGCAGCGCTGCCCATCCTCTGGATCTGGACCTGAGCCAAGCAGCGCAGGTAAGCTCTGAGCTTCGAGCGGTACGCACTCAGGAGAAGGCCCAGCTGCAGGAGCTCAATGATCGCTTTGCTGGCTTCATTGAGCGTGTCCATGAGCTCGAGCAGCAGAACCGAGCCCTTGAAGCTGAGCTGCTTCTGCTGAGGCAGAGGCACAGTGAGCCATCCTGCCTGCGTGCCCTGTATGAGCAGGAAGCCCGTGCTCTCCGAGCCGCTGTGGATGAGGCTGAACTGGAGAAGCAAGCTGCAATGAGCCGGAGGGAGCACTTGGAAGAAACACTGAGGGCCCTGCAGAGGCAGTACGATGAGGAGGCACTGGAGCGTGAGAACTCTGAGGCCAGGCTCATGGATGCACGCAAAGAGGCTGACGAGCGAGGTCTTACCCAGGTGGAACTGGAGAAGAGAGTGGGTGTCCTTCTGGATGAGCTGGCCTTCCTCAAGAAGCTCCATGAGGGTGAGATCTCTGAGCTGCAAGCGCAGATCCAGTATGGTGCACAGATAGCTGTTGAAACTGAGACGACCAAACCAGACCTGTCCAGTGCCCTGCGTGACATCCGTGCACAGTACGAGAGGCTGGCAGCACGCAATATGCAGGCTGCAGAAGATTGGTTCCGTGGGAAAGTGGGGCATCTGACGGAGACCGTGGCCCACCACACCAGCGCTGTGAGGACATCCAAGGATGAAGCAGGCGAGTACCGGCGACAACTGCAGGCACGCATCCTGGAAATAGATGCCTGCAAGAGCCTTAATGAATCATTGGAGAAACAGCTGAGGGAGGTGGAAGAAAAGCAGAGCGCAGAAATCACAGCCATGCAGGACACAATCAATGAGCTTGACAATGACCTAAGAGCCACTAAAGGTGAAATGGCCAGGTACCTTAAAGATTACCAGGATCTTCTCAATGTCAAGATGGCCCTCGATATTGAAATAGCTGCATACAGGAAGCTCTTGGAGGGTGAGGAATCCCGCCTCAGTGCTGGCATGGCAGGAGGTTTGGCCAGTTCCTACACGATGGCTCCCTCCTATTCACGCTCCATCTATTCTGTCCCGTCCAGTGTGACCTCTGCTGCCCCCTATCTGCTCAGCTCTCGCCTGGTGAGCACCACCCTGTCTGCAGAACCTTctaaggaggaagaggaagaggaggaggaagaagcaaaggaagaggaagaggaagagaaggaagaagtaaaagaagaagaggaagaagaaaagaaggaggaaaaggaagaggaagaggaggcagAGGGggatgaagagaaagaagaagcagGGGAGAAACAAGAGGaagaagaagaggaggctgcagaggaggaagaaaaggaaggaggTGAAGAGGAAGTTAAAGAGGGTGAGAAgcaggaaggagaagaagaagctgCACAGGTTGAGGAGGGTGgtgagaaagaaggagaggaggaagaggccGAGAAAGATGAGGAAAAAGGAGAAGATAAGGTCGAGGCTGAGAAAGATGCAGGAAAAGATAAGGAGGATAGTAAGACAGCTGAGCCAGTTAAGGAGGAAGCTGAGACAAAACCCGAACCAGCTAAAGAAAAGGTCAAAGAGGAGCCCGAAAAAGCCAAAcccaaagaaacagaaaaaccaaaagcaaaagatgaaggtgatgaagctAAAGCTGAGGGAAAGCAAGAGcaggaaaagcagaaagagGAAGCAGAAAAACCCAAAGCAGCAAAGTAAAAAATCTCAGGCAGTACAAAAACCTGCACGTATTTACCCTCAGTTCTCTGACGATGGCGCTGAATccaaaatgcaatgcaaagaTAACTTGCATATAGAATCAGCTAGAACAGCTTTGAAAGCAAATTACTGCACTATATTTATGAATGAAAGAGTactaaatgtgaaaaagtgaaatgttgCTTCTGAAAGTGCAATAAATCTATGCCTCTGA

Function

NR:

description
PREDICTED: neurofilament light polypeptide-like

GO: NA

KEGG:

id description
K04572 NEFL, NF-L; neurofilament light polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941155.2 True 2245 mRNA 0.52 4 11251011 11253556

Neighbor

gene id symbol gene type direction distance location
crkl crkl,LOC107700778,LOC107722822,LOC107591716,LOC106566436 coding upstream 31158 11204018 ~ 11219853 (+)
si:ch211-222n4.2 ccdc74b coding upstream 68019 11174854 ~ 11182992 (+)
odf2a odf2 coding upstream 81658 11154075 ~ 11169353 (+)
si:dkey-112m2.1 LOC108278529,LOC108437247 coding upstream 252077 10859325 ~ 10998934 (+)
exd1 exd1 coding upstream 424967 10824183 ~ 10826044 (+)
rpl17 rpl17,LOC107722835,LOC106568161 coding downstream 39719 11293275 ~ 11297617 (+)
LOC113543402 NA coding downstream 40538 11294094 ~ 11294160 (+)
LOC113543407 NA coding downstream 41354 11294910 ~ 11294977 (+)
LOC113543406 NA coding downstream 42454 11296010 ~ 11296078 (+)
LOC113543408 NA coding downstream 43785 11297341 ~ 11297407 (+)
G238987 NA non-coding upstream 42293 11139045 ~ 11208718 (+)
G238848 NA non-coding upstream 389397 10861354 ~ 10861614 (+)
G238818 sptan1 non-coding upstream 396756 10768826 ~ 10854255 (+)
G238830 NA non-coding upstream 462209 10785365 ~ 10788802 (+)
G238817 NA non-coding upstream 491477 10752817 ~ 10759534 (+)
G239085 NA non-coding downstream 196355 11449911 ~ 11451073 (+)
G239230 NA non-coding downstream 418033 11671589 ~ 11674445 (+)
G239231 NA non-coding downstream 456503 11710059 ~ 11742204 (+)
G239262 NA non-coding downstream 503242 11756798 ~ 11824929 (+)
G239286 nnt,LOC108437056,LOC107589270,LOC107681058,LOC107706486,LOC107750406 non-coding downstream 587859 11841415 ~ 11842334 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 509631 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 556572 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 673579 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 1684898 9488179 ~ 9566113 (+)
c1qb NA other upstream 1926143 9323196 ~ 9324868 (+)
G239282 NA other downstream 584484 11838040 ~ 11848717 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 1740401 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 1767711 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 2127300 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 3180021 14433577 ~ 14534213 (+)

Expression


Co-expression Network