odf2a (odf2)


Basic Information

Item Value
gene id odf2a
gene name odf2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11154075 ~ 11169353 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941440.2
CCGGAAGGGAAGGAAGCGTCTagtgaaaagagaaataattagCCTGTTAGCTAATACACAGATTATTCTTGTACGATATTTCGGGAATTTtgaatgtttgcttttttcGGATGAAAAAAGTGATGAGAACCAGCTCATCTTCGCCGCCGCTGCACGTGCACGTGAATGAAAGCACACCTgtacatgtgcatgtaaagAAGGGCATGAAGAACAGCCCTATAAAGCCAGCACAGGTTAAGGCGAAAGGCTGCTTACGTCCCACTGCTAAAGTTAAGACAAGAGTCCCATGGATTCCTCCGGGCAAAGTTTCAACGCGAGAAGCATTGTACAAGTGGGAGGGTCCAAGCCATTGTTTGGAGATCACCCCCCTACCTGAGCCAGACCCCTCGCGCTCCGCTCTCCGTCTGGAAGACCTCTCCACCGATGAGGAGGAAGCTCTGCACGGACGCATCAACCAGTATGAGAGGAAGATTGATAGCCTGATGACCGAGGTCAGCTCGCTGAAGAACGAGGTGGAGCTGCGTAAGAAGGAGCAGCAGCTAGAGCGTCAGTCTGAGAGGTTAAGCGTCTCACAGCGTGTCATCGctgagcaggaggaggagctggcCGAGGTCGCCAAGGAGCTAGAAATCACCGAGCGAGAGAACACACTCCTCCGGGAGTCCATGGAGAAAATACTGGAGGAAAACAGCTACGGCAGGTTGGAGAGAGAGAACCTGCAGCAGGAGAAGGATGTGCTGCTCAGGAAGCTGCTGGAGGCAGAGCTCGACAGCACTGCAGCCACCAAGCAGGTCCAGGCGCTCCGAGACACTGTTAGCCGCATGTCGAGGACTGAGAAGCGGATGACAGGCTCTGACTCTTCGTTGCTGGCCCGGCAGAAAGATCTCCTCCTGCAGAAGCTGGAAACTTTTGAGAGAACGAACCGAACACTGCGCCGTCTCCTGAGAGAGCAGCATGAGCATGAGATGGACTCGCTTCAACTGCTGGAGCAGAAAGACTCTCTGCTGAAGAGGCTCACTGAAGTCGAGGCAGAAAACTCGCATCTTCAGATGAAGCTacaagataaagagaaagaagtcGCTGACCTTGCCTGCCTTTTAGAGAATGAGAAGGAGCATGTGAAGACCACAAGTGAGCTGTCCAAGTCCCTGGAATCGACCCGAGCTCATCTGCAGGGCCAACTACGCAACAAGGAAGCAGAAAATAACCGCCTTTCAGTCCAGATTAAGAGCCTGGAGCGAGCAGCTGGTCAGCAGCAGGGAGAGCTGGAGCACGTGGAGGCTCAAATGCGGGAGCTGAAGCAGCGGGCTGAGGTGGATAAAGAGGCACTGAAGAAAGCCACGCGGGCACTGAAACAGAGAGCAGAGCGCAGTGAGGACACTGCAGGACAGCTCAGTGCTCAGCTGACCGAAATGGAAGCCCGGCTGGCAGACGCTGTTTCAACTGCAGAGAACTGGAGCAGTCGGCACGCGAAGGAGCTGAAGGAGAAAGGCCAGCTGGAGGTGGAGATCACACTGCTGAACAGCCGGATCACAGACCTGACGGAGCAGATGCATGTGCTTGAGGAGAAAACCCGAGCGGAGAGAGACGGACTTCTGGACCGGCTACACAGTATGACCACAGAGAGCACTACAGTCAGACTGGAGAACCAGAGCCTAAAGGCAACTCTGTCTGCACTGGAGGAGAAACTGTCTCTGTCCCGGTCTGAGGTAGAGCAGGTCAAAGCCTCAGTGAAGCAGTATGAAAGCTTAGTGGACAGCTACAAGATTCAGctgcagAAGACGCGTGCCGAGGCGGATGAGTACAGCATGCATGCGCAGCAGGCGGAGCGGGAGGCGCGGGCTCTgagggaggagctggatcaggaaCTGGATCAGGCCCGGAAGCAGCTGATGGGCCGCCTGAGCGAGCTGGAGCCACTACCCGATGCCCTGCGCCGCGCCGAGCTCCAGCTGCAGGAGGCACAAGAGAAAGAGCGTGTACAGGAGAGGAGGAATGCTGAGCTCACAACGGGTCTTGCTGAGCTACgtgttaagGTGGAACAGCAGGGTGTTCAGATGGAGAAGGTGCAGCAGAGGAACACAGTGCTGATGGAGGAGAACAACCAGCTCAAGCACAAAGTGGAGTCCCTCGACAGGAAGTTAGAGGAAGCCAGCTCTCAGAATGGAGATCTTCTGCAAATGATAGCAAAGCGAGAGGAGACCATCCTTCACAACCAAGTGCGTTTGGAGGAGAAGTCTCGTGAGTGCAACACTCTGAACCGGCAGCTAGAAGAGGCACTAGAGGACGCCAGGCGACAGGTGTCCAACACAAGGGAGCGAGCTGTGTCTAAAGAACGAGCCTCTCAGTCCAAATTGATTGAGCTGGAGACCCAACTGAGCCGAACCACTTCAGAGCTCAATCAGCTGCGGCGATCCAAAGACGAGGCAGAGAGGAGGTACCAGAGCCGTCTGCAGGACGTGAAGGACCGCCTGGAACAGTCGGACAGCACCAACCGAAGCCTGCAGAACTATGTGCAGTTCCTCAAAGCCTCCTATGCTAGTGTGTTCGGGGACTCAACTCTCAGCAGCACCTCACTCAGAGCTCATTCAGCCATCTGACACCCTGTACACTTCACACTGAGGCTGAGGTgatgcagaacacacacaccagggtaTATTTTTACACAGCATAGTGTGATGAGTTTACCttcatcagttttattttaatgtgagtAAGAACCAAAGTAAGACTCAACTCTAATCTTGTTGGATCCTCACGATCACTACTGTTCACTACTGCATGCTGCAGCAGTACTTATTTAGCAGAAGTAAATGTTCCTCATAGACTTTAATtaaatttcagacatttttaagAACATCTGATTTGTCTGATTATGAACTTAGGATTATTATTctagatatattttaatttttaatttgaccatctttatttaaaaacccCTAAGTTGAACAGACTATAATACACAGAGATGTATAGTTTCTTATAAACTTCTGAATTCTGTTGCTGTTCttcaaataaaatactgaatttcttcaaataaataaaataatcagcctCTGGCAAgaataagaaggaaaaaaatctacCCTGAAAGACTTGCATATCaattttttagacttttttagtttaaacctctttcatcaacatgttggtctgttttgactttaacagtttcctacattacccacaatgccatttgactacctgctgataatGGTGCAGGGAGATTTagccctcacttcatctctacctaaagagagcaatgcagcaatGCTTTAGTGTGTCCAgctctcccacctcccaaagtTGCCTCTTATCAGCACCATGACACTTGTACTCTCTTAGATCACTAACTGGCTGAGCTGAGCCTCTGACATAACTCAGTACAACTgtgttgtatagctgcattgcgtTTACTGTCTCCGCTACTTctacgctggatttctcattaatatgacgcTGAACGTCACTGGAAATGGTGAGTCAGAAAAGAAgcttttgtatgtgtgtgtgggttttttttttg
>XM_026941441.2
GGTGTTTATAGTTTTAGTTACTCCTTCACGAAGCAGTTATGTGTGCCAACCTCCGAATTCTTTTCAAGTACCAGTCGAATAACTGTTTACATTAGCTAGCTGCTTAGCCGCTAGTGGATGCTGTAAGGATGTATACAGAGAGTTAGATACAGCCAGGTTTTCTGTTAAAGGCGTTTGTATGGGATCCGCTCAGTTAGTCATCTAGCGTGTTCTGCCTTTAAAACTGACTAGAAAAAAAGTGATGAGAACCAGCTCATCTTCGCCGCCGCTGCACGTGCACGTGAATGAAAGCACACCTgtacatgtgcatgtaaagAAGGGCATGAAGAACAGCCCTATAAAGCCAGCACAGGTTAAGGCGAAAGGCTGCTTACGTCCCACTGCTAAAGTTAAGACAAGAGTCCCATGGATTCCTCCGGGCAAAGTTTCAACGCGAGAAGCATTGTACAAGTGGGAGGGTCCAAGCCATTGTTTGGAGATCACCCCCCTACCTGAGCCAGACCCCTCGCGCTCCGCTCTCCGTCTGGAAGACCTCTCCACCGATGAGGAGGAAGCTCTGCACGGACGCATCAACCAGTATGAGAGGAAGATTGATAGCCTGATGACCGAGGTCAGCTCGCTGAAGAACGAGGTGGAGCTGCGTAAGAAGGAGCAGCAGCTAGAGCGTCAGTCTGAGAGGTTAAGCGTCTCACAGCGTGTCATCGctgagcaggaggaggagctggcCGAGGTCGCCAAGGAGCTAGAAATCACCGAGCGAGAGAACACACTCCTCCGGGAGTCCATGGAGAAAATACTGGAGGAAAACAGCTACGGCAGGTTGGAGAGAGAGAACCTGCAGCAGGAGAAGGATGTGCTGCTCAGGAAGCTGCTGGAGGCAGAGCTCGACAGCACTGCAGCCACCAAGCAGGTCCAGGCGCTCCGAGACACTGTTAGCCGCATGTCGAGGACTGAGAAGCGGATGACAGGCTCTGACTCTTCGTTGCTGGCCCGGCAGAAAGATCTCCTCCTGCAGAAGCTGGAAACTTTTGAGAGAACGAACCGAACACTGCGCCGTCTCCTGAGAGAGCAGCATGAGCATGAGATGGACTCGCTTCAACTGCTGGAGCAGAAAGACTCTCTGCTGAAGAGGCTCACTGAAGTCGAGGCAGAAAACTCGCATCTTCAGATGAAGCTacaagataaagagaaagaagtcGCTGACCTTGCCTGCCTTTTAGAGAATGAGAAGGAGCATGTGAAGACCACAAGTGAGCTGTCCAAGTCCCTGGAATCGACCCGAGCTCATCTGCAGGGCCAACTACGCAACAAGGAAGCAGAAAATAACCGCCTTTCAGTCCAGATTAAGAGCCTGGAGCGAGCAGCTGGTCAGCAGCAGGGAGAGCTGGAGCACGTGGAGGCTCAAATGCGGGAGCTGAAGCAGCGGGCTGAGGTGGATAAAGAGGCACTGAAGAAAGCCACGCGGGCACTGAAACAGAGAGCAGAGCGCAGTGAGGACACTGCAGGACAGCTCAGTGCTCAGCTGACCGAAATGGAAGCCCGGCTGGCAGACGCTGTTTCAACTGCAGAGAACTGGAGCAGTCGGCACGCGAAGGAGCTGAAGGAGAAAGGCCAGCTGGAGGTGGAGATCACACTGCTGAACAGCCGGATCACAGACCTGACGGAGCAGATGCATGTGCTTGAGGAGAAAACCCGAGCGGAGAGAGACGGACTTCTGGACCGGCTACACAGTATGACCACAGAGAGCACTACAGTCAGACTGGAGAACCAGAGCCTAAAGGCAACTCTGTCTGCACTGGAGGAGAAACTGTCTCTGTCCCGGTCTGAGGTAGAGCAGGTCAAAGCCTCAGTGAAGCAGTATGAAAGCTTAGTGGACAGCTACAAGATTCAGctgcagAAGACGCGTGCCGAGGCGGATGAGTACAGCATGCATGCGCAGCAGGCGGAGCGGGAGGCGCGGGCTCTgagggaggagctggatcaggaaCTGGATCAGGCCCGGAAGCAGCTGATGGGCCGCCTGAGCGAGCTGGAGCCACTACCCGATGCCCTGCGCCGCGCCGAGCTCCAGCTGCAGGAGGCACAAGAGAAAGAGCGTGTACAGGAGAGGAGGAATGCTGAGCTCACAACGGGTCTTGCTGAGCTACgtgttaagGTGGAACAGCAGGGTGTTCAGATGGAGAAGGTGCAGCAGAGGAACACAGTGCTGATGGAGGAGAACAACCAGCTCAAGCACAAAGTGGAGTCCCTCGACAGGAAGTTAGAGGAAGCCAGCTCTCAGAATGGAGATCTTCTGCAAATGATAGCAAAGCGAGAGGAGACCATCCTTCACAACCAAGTGCGTTTGGAGGAGAAGTCTCGTGAGTGCAACACTCTGAACCGGCAGCTAGAAGAGGCACTAGAGGACGCCAGGCGACAGGTGTCCAACACAAGGGAGCGAGCTGTGTCTAAAGAACGAGCCTCTCAGTCCAAATTGATTGAGCTGGAGACCCAACTGAGCCGAACCACTTCAGAGCTCAATCAGCTGCGGCGATCCAAAGACGAGGCAGAGAGGAGGTACCAGAGCCGTCTGCAGGACGTGAAGGACCGCCTGGAACAGTCGGACAGCACCAACCGAAGCCTGCAGAACTATGTGCAGTTCCTCAAAGCCTCCTATGCTAGTGTGTTCGGGGACTCAACTCTCAGCAGCACCTCACTCAGAGCTCATTCAGCCATCTGACACCCTGTACACTTCACACTGAGGCTGAGGTgatgcagaacacacacaccagggtaTATTTTTACACAGCATAGTGTGATGAGTTTACCttcatcagttttattttaatgtgagtAAGAACCAAAGTAAGACTCAACTCTAATCTTGTTGGATCCTCACGATCACTACTGTTCACTACTGCATGCTGCAGCAGTACTTATTTAGCAGAAGTAAATGTTCCTCATAGACTTTAATtaaatttcagacatttttaagAACATCTGATTTGTCTGATTATGAACTTAGGATTATTATTctagatatattttaatttttaatttgaccatctttatttaaaaacccCTAAGTTGAACAGACTATAATACACAGAGATGTATAGTTTCTTATAAACTTCTGAATTCTGTTGCTGTTCttcaaataaaatactgaatttcttcaaataaataaaataatcagcctCTGGCAAgaataagaaggaaaaaaatctacCCTGAAAGACTTGCATATCaattttttagacttttttagtttaaacctctttcatcaacatgttggtctgttttgactttaacagtttcctacattacccacaatgccatttgactacctgctgataatGGTGCAGGGAGATTTagccctcacttcatctctacctaaagagagcaatgcagcaatGCTTTAGTGTGTCCAgctctcccacctcccaaagtTGCCTCTTATCAGCACCATGACACTTGTACTCTCTTAGATCACTAACTGGCTGAGCTGAGCCTCTGACATAACTCAGTACAACTgtgttgtatagctgcattgcgtTTACTGTCTCCGCTACTTctacgctggatttctcattaatatgacgcTGAACGTCACTGGAAATGGTGAGTCAGAAAAGAAgcttttgtatgtgtgtgtgggttttttttttg

Function

symbol description
odf2 Enables small GTPase binding activity. Involved in several processes, including centriole-centriole cohesion; cilium organization; and regulation of cilium assembly. Located in centriole; centrosome; and ciliary basal body. Part of centriolar subdistal appendage.

NR:

description
PREDICTED: outer dense fiber protein 2-like

GO: NA

KEGG:

id description
K16479 ODF2; outer dense fiber protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941440.2 False 3529 mRNA 0.50 19 11154075 11169353
XM_026941441.2 True 3648 mRNA 0.50 19 11154208 11169353

Neighbor

gene id symbol gene type direction distance location
si:dkey-112m2.1 LOC108278529,LOC108437247 coding upstream 155141 10859325 ~ 10998934 (+)
exd1 exd1 coding upstream 328031 10824183 ~ 10826044 (+)
wdr34 wdr34 coding upstream 401390 10743371 ~ 10752685 (+)
snrpd3l snrpd3,smd3,LOC105014836,LOC106563120 coding upstream 442533 10707552 ~ 10711542 (+)
specc1lb specc1l,LOC108437337 coding upstream 477066 10650501 ~ 10677009 (+)
si:ch211-222n4.2 ccdc74b coding downstream 5501 11174854 ~ 11182992 (+)
crkl crkl,LOC107700778,LOC107722822,LOC107591716,LOC106566436 coding downstream 34665 11204018 ~ 11219853 (+)
nefla LOC108279243 coding downstream 81658 11251011 ~ 11253556 (+)
rpl17 rpl17,LOC107722835,LOC106568161 coding downstream 123922 11293275 ~ 11297617 (+)
LOC113543402 NA coding downstream 124741 11294094 ~ 11294160 (+)
G238848 NA non-coding upstream 292461 10861354 ~ 10861614 (+)
G238818 sptan1 non-coding upstream 299820 10768826 ~ 10854255 (+)
G238830 NA non-coding upstream 365273 10785365 ~ 10788802 (+)
G238817 NA non-coding upstream 394541 10752817 ~ 10759534 (+)
G238710 setb,LOC108279391,LOC103047620,LOC108437330,LOC107584530,LOC107675639 non-coding upstream 506363 10641780 ~ 10647712 (+)
G239085 NA non-coding downstream 280558 11449911 ~ 11451073 (+)
G239230 NA non-coding downstream 502236 11671589 ~ 11674445 (+)
G239231 NA non-coding downstream 540706 11710059 ~ 11742204 (+)
G239262 NA non-coding downstream 587445 11756798 ~ 11824929 (+)
G239286 nnt,LOC108437056,LOC107589270,LOC107681058,LOC107706486,LOC107750406 non-coding downstream 672062 11841415 ~ 11842334 (+)
LOC113543117 camkk2,LOC108437385,LOC107739694,LOC107736868 other upstream 412695 10712283 ~ 10741380 (+)
adora2ab adora2a,LOC108278457,LOC108437362,LOC107736926,LOC107584529,LOC107675636,LOC107661642,LOC107739748 other upstream 459636 10678765 ~ 10694439 (+)
oaz1b oaz1b,LOC108279393,LOC108410751,LOC103361660,LOC106522818,LOC104924827,LOC106561397 other upstream 576643 10571869 ~ 10577432 (+)
myo5b myo5b,LOC107718970 other upstream 1587962 9488179 ~ 9566113 (+)
c1qb NA other upstream 1829207 9323196 ~ 9324868 (+)
G239282 NA other downstream 668687 11838040 ~ 11848717 (+)
sdhaf1 sdhaf1,LOC102800057 other downstream 1824604 12993957 ~ 12996622 (+)
rtn2b rtn2,rtn2b other downstream 1851914 13021267 ~ 13029285 (+)
ppp2r2bb ppp2r2bb,LOC108441626,LOC108279019,LOC107677389,LOC107697624,LOC105902388,LOC107750325,LOC107587064,LOC106567445,LOC108417198,LOC107587242,LOC105011263 other downstream 2211503 13380856 ~ 13443050 (+)
jakmip2 jakmip2,LOC108431873,LOC107661678,LOC107692981,LOC107742440 other downstream 3264224 14433577 ~ 14534213 (+)

Expression


Co-expression Network