RNA id: XM_034311044.1


Basic Information

Item Value
RNA id XM_034311044.1
length 2646
RNA type mRNA
GC content 0.47
exon number 8
gene id si:dkey-247m21.3
representative False

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 12151422 ~ 12200212 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actatcCACACCTGctttaatAGGCGCTGCAGTGTTTAGTGTGGAGGAATCCCGTCGGACTGTCTCCATGCAGATGACCAGTGATGGCCACGACGGCCGACCCCACAGAAGAATCAGTTGATGAAGTGGTGAGTGAGCACATTTTTAACCCTCTGGAGAGGATCATTCTGACCTTCTTCCTGGCATCTATTATCATTATGACTGTCCTTGGTAACCTGCTGGTGATGGTGGCTCTGTCAAGGGACAGACAGCTGAGGAAGAAGAAGACCAACTACTTCATTGTCTCCCTGGCGTTCGCAGACCTCCTGGTGGCTCTTTTAGTGATGCCGTTCGCGGCGATAGAGCTCACCACAGGCCACTGGAGTTACGGAGAGACGTTTTGCCTGGTGCGCACCTCGCTGGATGTGCTGCTCACCACAGCGTCCATACTGCACCTGTGCTGCATTGCCCTGGACAGGTACTATGCAATCTGCTGCCAGCCCCTGGTCTACAGGAACAAGATGACGCCTGTTAGAGTGTCTCTGATGCTGGGGGGATGTTGGGTTATCCCCTTGTTCATCTCCTTCCTCCCCATCATGCAGAACTGGAATGCCATTGGCATCGAGGACATTATTGAGGAGAGGAAGCTCAGCCACGGCTCAAACAGGACATCCTGCATATTCATGGTGAACCGACCATACGCCCTTGTCTGCTCAGCTGTGGCCTTCTATGTGCCTCTGGGCCTGATGATCCTCGCCTATCAGCGCATCTATGTGACGGCTATGGAGCACGCGCGGCAGATCCGGATGCTGCGGCGCGCCGGATCCACTCCCATATCCTCTTACTACAGTCAAGAACACCCCGGCTCCAGCCGCATGAAGATCGAGACCAAGGCGGCCAAGACGCTGGCAGTCATCATGGGCTGCTTCTGCCTGTGCTGGGCACCGTTCTTCATCACTAACGTGCTGGACCCCTTCATCCAGTACAGCGTACCGTGGCAGATGTGGACCACATGGCTGTGGCTGGGATACATTAACTCGGGCTTAAACCCATTCCTCTATGCCTTTCTGAACCGGGCTTTTCGCAGAGCCTTTCTCTTGATCCTGTGCTGTGGGGACATGCGCTATGCCCGCCAGGGGAGCTTTAGCCCGAGCAGACCTTGCTCAGCATCTGTGAACGGAACATCCATTGCGCTCAGGAGCACTTTTATCGAGGTGCCATCTCCAGTTCTGCCGGAGCTCCTGGCACACAGATTCAATGGGCAGGCCCATAATAATAGGTTGTCATTTCTTCCAAACCGAAGCTACAGTGACAACGGCAAACGAATCCTTTCTAGTGAACAGGAATCTCTGGATTCTGCTGGCGTTTTCTAACAGAGACAATACAAACCTACAGATGGCAGCAAGCTGTTACTACAAACCAGCATCAGCACACAGATGGAAGACATGGCTTCTTCAAATAAGCCAGAGATGCTCCAGTGCTCCAATACTCATGGATTTTTACCTTTTGTGACAAACCTGGAGTTGAATCACTACAATGAACCTTGTGAAAGAGCATCTCACAGACTTTGCTCAGGTCATGGTAAAGGGTAAGCCAAGCACAACAGCACATGAGAGATGATTAGCTGTGAATGTGAGTGAACCTAATTACACGAAGGAAAAAATTACAGTAGTGGATGCTACAAAGAAAAATCCCTAGCTGACCTCCTCCTTGACCAAATGTCATTTCAAAGAGGCCACGAGGAGCACTGACCTCTCCGTTTCTCTTTTATGGAACTGACACTGCCAGGCTGTAACTGTTGGGAAATGATTACAAGTGAATTTATCATGGTCTAGTATCAGGGTGAGCCATGTGGCTTGCTCAGAGATtacttaaagaaaaatgtacacaattttccTCATACCCCAAACACAGACCTTTTAGTGTCTGACATTTGCTTTATTAGTTTTGCGCCGGATCTACAAGGATGACGCAGTTATGAGCATCTTGCAAACTTCACATCTTAGTCAGTGTCTCAAACAGACTTTATGTGGTTTTTGAcagtaatatattttgtatgaaTGCGGAAAACATTCTTAGCTCCATCTTGAAGCCGAATCACTATACAGTCTAGTactattaatgttttttttgtttttgttttttttttaacaatgctAAACTCACATCAGTGAGCTTCCTTCAGCTACATCAGGCAGAAAAagtgctgggaaaaaaaaattgctgctcACGTTATgtgcacactgtaaccataacaacactcGTCCATACATTCTAGTATCAGCGGTTGAGAAAACACACCTAGTGTGAAAACAGCTTTCATCTactagctccagtgcaaaattaaatcgtggacaccaaacatgtcttaaCCCCACTTTGGGTAAGAGGAACAGTGTGTACATTTGAATTGTGGCTGAACTGTTCTTTTAAAGCTAATATTTCCATCAACACACGGAAGATCAGCCTGTGGTAGATCTACTTCTCTCCTTAGATGGATTgctctatttatttttgtgtacaATTTGGCTTCAGAAGTAAGGAGCAACAACATTTGTCACTGTGTGACATTTCTTATTGTACCTTCTTGTATTCTCTGATATGATTTTGTGTGTTGAAATATGGTTTAAAATATACCTGTGGGACAGAAGTGTTGAagttttactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283203 lncRNA upstream 76591 12009562 ~ 12086893 (+) True G239366
TU283201 lncRNA upstream 159956 11997445 ~ 12003528 (+) True G239365
TU283200 lncRNA upstream 167386 11978499 ~ 11996098 (+) True G239364
TU283189 lncRNA upstream 216944 11946309 ~ 11946540 (+) True G239356
TU283095 lncRNA upstream 321150 11841415 ~ 11842334 (+) True G239286
TU283304 lncRNA downstream 10343 12210555 ~ 12215820 (+) True G239455
TU283308 lncRNA downstream 19571 12219783 ~ 12222027 (+) True G239458
TU283327 lncRNA downstream 74312 12274524 ~ 12274746 (+) True G239475
TU283328 lncRNA downstream 77499 12277711 ~ 12278145 (+) True G239476
TU283418 lncRNA downstream 221476 12421688 ~ 12425437 (+) True G239565
XM_026941157.2 mRNA upstream 81219 11973911 ~ 12082265 (+) True tnksa
XM_026941158.2 mRNA upstream 83113 11973911 ~ 12080371 (+) False tnksa
XM_026941324.2 mRNA upstream 253140 11888291 ~ 11910344 (+) True fybb
XM_026941327.2 mRNA upstream 253140 11888291 ~ 11910344 (+) False fybb
XM_026941325.2 mRNA upstream 253140 11888291 ~ 11910344 (+) False fybb
XM_026941076.2 mRNA downstream 46833 12247045 ~ 12260910 (+) True pde6b
XM_026941072.2 mRNA downstream 72382 12272594 ~ 12273552 (+) True LOC113543076
XM_026941071.2 mRNA downstream 78001 12278213 ~ 12286489 (+) True zgc:103482
XM_026940932.2 mRNA downstream 192539 12392751 ~ 12454977 (+) True efna5a
XM_026941458.2 mRNA downstream 354217 12554429 ~ 12555667 (+) True LOC113543337
TU283091 other upstream 314767 11838040 ~ 11848717 (+) True G239282
XR_003404416.1 other upstream 866077 11297341 ~ 11297407 (+) True LOC113543408
XR_003404414.1 other upstream 867406 11296010 ~ 11296078 (+) True LOC113543406
XR_003404415.1 other upstream 868507 11294910 ~ 11294977 (+) True LOC113543407
XR_003404410.1 other upstream 869324 11294094 ~ 11294160 (+) True LOC113543402
trnaf-gaa_27 other downstream 491030 12691242 ~ 12691314 (+) True trnaf-gaa_27
XR_003404413.1 other downstream 1928215 14128427 ~ 14128534 (+) True LOC113543405
TU284898 other downstream 2254755 14454967 ~ 14456634 (+) True G240839
TU285380 other downstream 3264741 15464953 ~ 15465303 (+) True G241254
TU286157 other downstream 4592492 16792704 ~ 16793457 (+) True G241908

Expression Profile