RNA id: XM_026941325.2


Basic Information

Item Value
RNA id XM_026941325.2
length 2912
RNA type mRNA
GC content 0.47
exon number 19
gene id fybb
representative False

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 11888291 ~ 11910344 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAaacagcctctctctctgtctcgctctctctcacacacgcacccacacacacacacacacacacacacacacacacacacacacagtggagctCGTTCTATCAGTCTGTGAATCAGACACAGCAGGAGCCCACGATCATCATGGACAACAAATCAGATGTGAAAGCCATTCGGGCTCGTTTCCAGACTGCAGGTGTCTCGATGGAAGGAAGTGCTGCAGCACGTCCAAAACCCACTGTCCACCCAACCCTATCAGGTCCCATGTTGCCATCCAAAAAACCTGCACTGGAGGTCAGCCTCTCGGGCAGTGCTGCTGCTTCTAACTCCACCACCCCTAAACCCAGCTACATGAAGAACATAGTCTCCAACAACAGTGCACCAGAGTCTTGTGAGTCTCCAAAGCCTAAAGTCCTCGCCAGCAGGTTTGagaatgcaaatgcaaatgagGATAACAAACCCCCTTTTGGTAAAATCTTGAAACCAAAACCACCAGATTCGAACCAGAACGGTGAACCGAAGCCAAAGGTACCATTCCAGAAGCCACTGATAACAGAGGCCAAGAGCACATTTCCCAAGCCACCACCTGTGACGGCCAAACCTTTTAAGAGCCCCAAACCTGAGAACAATGAAAGCACTGTGAACGCCACCCCTACCCCTCCAAAAATGCCTGCAGTTCCCAAACCGAAGAGTACCGTCAACCTACTTCGGCAGCATCAAGAAGACGATAAGGAGGAGGATCATACGGCAAAACCAGTCTCACATGTAAAGCATCCCAGCTTCCGTGCTGCCCAAACTCTCTTCAACAAAGCAGAAGAAGTAGCAAAGGATGAGTCCAAATCACAAAGCTCAAAAGACTCACAAGTGCCAGGCCCTTTGGCTGTACGAAAGAAACCTAGCTACAGTGCCAAACCCTCCGGAcctgacacacagacagtgaaaGATGATCCTTTAGCCCCAAAAAGAAACCCGTTAACTAACCTTCTTGCTCTCGGCAGTGCGCCAAGCAAACCTAACAGACCACCCAAAGTCAACCTTGAGAAGTTCAAGAAGGGCGCAGAACCTCCAGgacCTGAAATAAAGAAGGGaggtcctcttcctcctcctcctcctccagcatCACATCCCAGCAGCCAAGCAGCTCCAACTTTGCCTCCACGACCCATAGTACAGCCAGAAGAGGAAtatgatgatgttggtgatcTGAATGACTCGTCGTTTGGAAACTCAGGGCGACGAGATGAGGGAAGTGGAAGTGACGGGGAGACGTATGAGGAACTTGATGGATGGTCCGCAACAGAGGTGAAGGAGCAAGAAAAGAAACgggaaaaggaagagaaaaagcgAGCAgagcaagaaaagaaagaccAGAAGGAAcgtgaaaaaaaagaacaagaggCCAGAAAGAAATTCAAACTGTCTGGGCCCCTGCAAGTCATCCATAAAGTAAAAGCGAGAGTGGACTGTAAAGGTGGCAGGAATGACCTCAGCTTTAAACAGGGCGACTCTATTGACATCCTCCGGATTACAGACAACCCTGAGGGCCGATGGCTGGCCAGGACTCAAGATGGGTCCTGTGGCTATGTAAAGACTGAATCAGTCGAGATCGACTTTGATTCTCTGAAAAATCAGAGCAGGCCTCTGCCTGACAATGACGGAGACTTGTACGATGATGTGGGGTCTCAGGAGGACAGCAGTAGgaGCACCAGTGGTCCAGGAGTTGTTCTGCCTCCACCACCGGAGGGACCTGATGATATATATGATGATCTGGAAGATTCCAGCCTTAATGTCAGCCAGGAGCCCAAGCCTCTCCCCAAAGCACGCAGCTTCATTCGGATTCTAAAGACCCCCAGTGACTGGAGAAAAAGCCCTGTCCACACTAACGTGGTTCCTCCCCCTCCACAGTTCAGTCCAGAGGATAACCCAGGAGCTGATGAAATTTATGATGACGTGGACACACCGCAGCCTCCTAGCAGcATGCCTCCTTCCAAACCGAAGTCGTCGAAACCTGAAGCTAAGCCAGACGATCcgaagaagcagaagaaattTGAAAAAGAGGAGAAGGATTTCAGAAAGAAGTTTAAGTTTGACGGAGAGATCCAGGTTCTGTATCAAGTGACTGTAATCGGTAATAAGAAAGGCAGTGGGAAGGATCTGACAGTGCAGGCCGGAGAAACCCTGGACGTCATCAGCAACTCGGACAATGACAAACTCATCTGCAGGAACAAGGAGGGAAAATTCGGATATGTCTCGCACAGTAACGTCCAGACTGAGGATAATGACATCTATGATGACGTCGGTGATGATTGCATCTACGACAACGACAACTGATTGTGAAAGTGCCAGCCTCCTGATAAAGCTGTGGATCTCAGGCCTGTTTTAATGCCCCGTCTGACATTTTATGTCAGGTTTATTTACTCTACATGTGGTGGGAcgcaacgtgtgtgtgtgtgtggaatgagTCAATCCAGTCATGTGACTCAAACCCAGCAGGAGTTCACTTTCAGCAGTTTAAAGGAACAATTTGGACAAAAGTCAAATGTACATAATGTCCCTTTCCCCAAAAGTAGCTGATCAGCTGAGACATGTTTGATGTCCTGTCAGATAGACTACAGTTGGGAAAAGGGGGCATTGTGTACTATTAATGTGCTTGATTTTCACCTTTAGGACATTTTTATACACAACTTTGATTGTGGTTGGTATTTACGGATACCAAGGAAAACCAGTGTGCTactctgtttatttcattttctttggtCAGATTAAAAACGTAGATCGTAGATTATATGCAGTTGTATAACATTTCTAACACCATATTTATGTAAGAGgcagtattttgtttttttttccccctgttatATTGTCACTTTGTTTTGTAGACTacagtttaataaagaagatTCCATTACAGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU283095 lncRNA upstream 45957 11841415 ~ 11842334 (+) True G239286
TU283069 lncRNA upstream 63362 11756798 ~ 11824929 (+) True G239262
TU283036 lncRNA upstream 146087 11710059 ~ 11742204 (+) True G239231
TU283035 lncRNA upstream 213846 11671589 ~ 11674445 (+) True G239230
TU282859 lncRNA upstream 437218 11449911 ~ 11451073 (+) False G239085
TU283189 lncRNA downstream 35965 11946309 ~ 11946540 (+) True G239356
TU283200 lncRNA downstream 68155 11978499 ~ 11996098 (+) True G239364
TU283201 lncRNA downstream 87101 11997445 ~ 12003528 (+) True G239365
TU283203 lncRNA downstream 99218 12009562 ~ 12086893 (+) True G239366
TU283304 lncRNA downstream 300211 12210555 ~ 12215820 (+) True G239455
XM_026941343.2 mRNA upstream 9243 11869742 ~ 11879048 (+) True ccdc80l2
XM_026941331.2 mRNA upstream 110935 11758420 ~ 11777356 (+) True fgf10a
XM_026941139.2 mRNA upstream 169525 11652081 ~ 11718766 (+) False rai14
XM_026941157.2 mRNA downstream 63567 11973911 ~ 12082265 (+) True tnksa
XM_026941158.2 mRNA downstream 63567 11973911 ~ 12080371 (+) False tnksa
XM_034311043.1 mRNA downstream 241078 12151422 ~ 12200212 (+) True si:dkey-247m21.3
XM_026941275.2 mRNA downstream 241078 12151422 ~ 12200212 (+) False si:dkey-247m21.3
XM_034311044.1 mRNA downstream 253140 12163484 ~ 12200212 (+) False si:dkey-247m21.3
TU283091 other upstream 39574 11838040 ~ 11848717 (+) True G239282
XR_003404416.1 other upstream 590884 11297341 ~ 11297407 (+) True LOC113543408
XR_003404414.1 other upstream 592213 11296010 ~ 11296078 (+) True LOC113543406
XR_003404415.1 other upstream 593314 11294910 ~ 11294977 (+) True LOC113543407
XR_003404410.1 other upstream 594131 11294094 ~ 11294160 (+) True LOC113543402
trnaf-gaa_27 other downstream 780898 12691242 ~ 12691314 (+) True trnaf-gaa_27
XR_003404413.1 other downstream 2218083 14128427 ~ 14128534 (+) True LOC113543405
TU284898 other downstream 2544623 14454967 ~ 14456634 (+) True G240839
TU285380 other downstream 3554609 15464953 ~ 15465303 (+) True G241254
TU286157 other downstream 4882360 16792704 ~ 16793457 (+) True G241908

Expression Profile