RNA id: AMCG00010275


Basic Information

Item Value
RNA id AMCG00010275
length 2922
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00010275
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22428369 ~ 22432273 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTACTCTCAGTGATAACCGGGAGGAGGGGTCTAGCGAAGCCATGGCTGAGAAGGAGAATAATCTGAAAACAGCCAGGTTGTGGAGGGATGCTGCGCTGCGCTCCAGGAAGCTGAGGAGCAACTTGCGCCAGCTCACCCTGAGCACCAACAACAGCCAGAAGATCACTCTGCCAGAGAACATCAGTGAGATCGAGGTCCTCAATCTGGGCAACAACTCTTTACAGGAGCTACCTGAAGGATTTGGAGCCACGCTCAGCAACCTGCGTGTTTTGATCCTGAGGAGGAATAAATTTGCCACCGTTCCCCTGGCTGTGTTTGAGCTCAGGCAGCTGACAGAGCTGGATATAAGTCACAATTGCTTGAGCTACTTTTCTGAGGATGTTGAATGCTTGAAGAGCCTGAAAAAGCTGTGCATCAGCCACAACAAGATCAAATGCCTGCCATCTCGATTAGGCACTTTGCATTGCTTGGAGGAGCTGGACATCAGTTTTAATGAGCTGTTTGAACTTCCTCGCTCCTTCGCTCATCTTAAGAAGCTCAGAACGCTGGACGCTGACCATAACAAACTAGCTTATTTCCCCCAGGAGATTCTGTCACTTAGTGACCTGGAGGAACTGGACTGTTCAGGCAATAAATTTGAGGGATTACCCAGTGGAATTATGACACTGCAGTCCATCAAGATTTTGTGGCTGAGTAGCACTAGGATTTCCATGCTGCCTGATGCGTTCTGTGATCTGAAGAACTTGGAGAGCCTCATGCTGGACAGCAATTATTTGAAAGCTTTACCACAGTCCTTTGGGAAAATGCAAAGACTGAAAATGCTAAACCTTTCTTCAAACTCCTTTGAAGAATTCCCTCAAGTTATCTTGGAGATTTCTGGTTTAGAGGAACTGTACTTAAGCAGAAACAGACTGACACTTGTCCCGGAAGAGATAGGCAGGTTATGCAAACTTGCCAATTTGTGGCTGGACAATAACAAAATTACATATCTGCCCGACTCTATAGTGGAGCTGGGCAAACTAGAAGAGCTGGTTTTACAGGGTAACCAAATCGCTATCCTTCCTGACAATTTTGGAAAGCTGTCCAGGGTTAATATATGGAAAATTAAAGACAACCCTCTCATACAGCCTCCGTATGAGGTTTGCATGAAAGGCATCCCTTACATTGCAGCCTATCAGAAGGAACTAGCACATTCCCAGCCTGCTGTCAAACCAAGGTTAAAATTGGTCCTAATGGGACAGAAGGATGCTGGCAAGACTGAACTGAGACAATGCCTCATTAACAAACCACAGGATGTCACAGTAGCACCTGTGAACAAAGGGATAGATGTGACTAACTGGATAGCAGATGCTGAGCGCAGTCTTACTTTTATCGTGTATGATTTAACTGGGGCCCAGAGCTATGATCTCATAAAACCCTTTTTCCTTTCACCAGGTGCTTTATACATTCTGGTTGTGAACTTAAAAGCGTATGTGTCCAGGCACTTTTATGCCAGCGTGGGGTATTTCTTGCATCTCCTCAGTGCCAAGGTCCCGCACGGCGTGGTGTGCATTGTGGGCACACACACGGACTTGTGCAACGAGGTGGAGATTGAGGAGAAATGTCTGGATATACACTGCCAGATCGCCCTGCAAGAGAAGAGGGACACCGAGTTCCTGCACAGCCTGGCCCGCAAGGTGGACGAAGCGCAGGGCCAGGACTATGCAGCGAGGACTTCTAGCCCACATGTGCTTTACTACGGGGTCTCCGACAAAAACCTGCGGCGCAAGAAAGCACAGCTCCAGTACTTGCTCAACCACCGTCTCCAGATTCTCTCCCCAGTCTTCTGCGTGAGCTGTGTCGGGGACCTCCGCAACACGCAGCGACTGAAAGACAAGCTCATGTCGGTGGCTGACCACCGGGAAATCTTTCCCAACCTGCACCGCATCCTCCCCAAGTCCTGGCAGATGCTGGAGGAGCTGCACTTTAAGCCCCAGGATCTCTGGGTCTCCTGGTGGGACTCAGCCAGACTGGGCTTGCAAGCCGGGCTGACAGAGGATCGCCTTCAAAGCGCCCTGTCTTACTTGCACGAGAGCGGGAAGCTGCTCTACTTTGAGGACAGCCTGACCCTCAAGGAGTATGTCTTCCACAACCTCCCTAAGTTCATCGACATCCTCAACGTCTTTTTCCAGAGGGATGCTGCTGCCCTGCTGCAGAAACTGCTGGGTGAGGCCGATGGGGACCAGGTGAGGGTCACCCAGCTCCATCACTACGTTGAGGGCTTCCTCCTGCACGGCCTCCTGCCTTCCCATGTTATGCGGCTGCTCCTGAAGCCCCACATCAAGACCCAACAGGACCTGCACCTTATCCTAGAGCTACTGGAGAAGATGGGCCTCTGCTACTGCATCAACAAGCCCAAGTGCAAGCCACTGAACGGCGCCACTGTCTGGTACAAGTTCCCGTGCTACGTCAAAAACGAGGCTCCACACGCTGAGGCGTGGATCAACGGTGGCTCTGGCATCCCTGGACACCTGTTTGCGGTGGAGCAGTTGCAGATTGagtacagcttcccttttctcTTTCCTCCCGGCCTGTTCGCTCGCTTCAGTGTGCAGATCAATGCCCACGTGGTGCAGCGCTCCGATGGCAAGTACCAGATTTTCGCTTATAGGGGCAAAGTGCCCGTGGTGGTCAGCTATCGGCCCTCTCTGAGCAGGCTGCAGGCTACAACCTTGTCTATTGCCAGCCACGCTTCGTTGCCAAATATCTGGACAGCTTGGCAAGCCATAACACCTTTAGTGGAAGAATTGAATGTCCTTCTGCAGGAATGGCCAGGCCTTTACTACACTGTGCATGTCCTTTGTTCCAAGTGCCTTAAACGAGGGTCCCCTAACCCTCATACATTTCCAGCACTGCTGAGCCACAGCCCAAAAGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99051 lncRNA downstream 45239 22380734 ~ 22383130 (-) True G79430
TU99042 lncRNA downstream 120049 22308118 ~ 22308320 (-) True G79424
TU99019 lncRNA downstream 329581 22096838 ~ 22098788 (-) True G79407
TU99018 lncRNA downstream 336393 22091599 ~ 22091976 (-) True G79406
TU99017 lncRNA downstream 343805 22084247 ~ 22084564 (-) True G79405
TU99106 lncRNA upstream 249392 22681665 ~ 22694959 (-) True G79466
TU99134 lncRNA upstream 302722 22734995 ~ 22735440 (-) True G79483
TU99199 lncRNA upstream 664329 23096602 ~ 23097308 (-) True G79541
TU99200 lncRNA upstream 676580 23108853 ~ 23109092 (-) True G79542
TU99206 lncRNA upstream 709112 23141385 ~ 23145055 (-) False G79548
AMCG00010274 mRNA downstream 66515 22357982 ~ 22361854 (-) True AMCG00010274
AMCG00010273 mRNA downstream 74017 22350400 ~ 22354352 (-) True AMCG00010273
AMCG00010268 mRNA downstream 352286 22069126 ~ 22076083 (-) True AMCG00010268
AMCG00010269 mRNA downstream 364014 22049997 ~ 22064355 (-) True AMCG00010269
AMCG00010270 mRNA downstream 384890 22030994 ~ 22043479 (-) True AMCG00010270
AMCG00010276 mRNA upstream 4151 22436424 ~ 22443529 (-) True AMCG00010276
AMCG00010277 mRNA upstream 19916 22452189 ~ 22530542 (-) True AMCG00010277
AMCG00010280 mRNA upstream 267465 22699738 ~ 22708389 (-) True AMCG00010280
AMCG00010287 mRNA upstream 427405 22859678 ~ 22869451 (-) True AMCG00010287
AMCG00010286 mRNA upstream 555134 22987407 ~ 22996441 (-) True AMCG00010286
TU98958 other downstream 446395 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 1346544 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 1486976 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 4482608 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 4572639 17852867 ~ 17855730 (-) False AMCG00010190
TU99198 other upstream 650573 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 927370 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 3940469 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 9522111 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 10563177 32995450 ~ 32999999 (-) False AMCG00010509

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038441 True 2979 mRNA 0.48 2 NC_007132.7 19872829 ~ 19906388 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_07699736_07726659.mRNA True 3425 mRNA 0.47 4 CI01000006 7699736 ~ 7726997 (+)