RNA id: AMCG00010280


Basic Information

Item Value
RNA id AMCG00010280
length 4549
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00010280
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22699738 ~ 22708389 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAGCTCCATTCATAAAAAGGAAGGCGAGGTGGCTGCTTGCGATAGTAATCCTCTCTGGAGAAAAACACAGGACAGCCACACTGCACGGGCTTGCGTGCATAGAAACGGATTGCAGCTGATTGTCCCGTTTGACAAAATAATAGACATTGCATCTGAAGAAAATGGTGACTATGGACGAACTTTGTGAGATGGAATGTACCGTTTTGAAAAGGTTGCTGAAGGACGACAGTGGGAAATGTCTGGTCCTGGACTGCAGATCATTTCTGGCGTACAGCGCTGGACACATCCGCGGCTCGGTCAATATCCGCTGCAATACGATCGTGAGACGCAGGGCTAAGGGCTCGGTCAGCTTGGATCAGATCCTGGCGGGCGACGAGGAGGTCAAAGCCCGCCTGAAAGCCGGACTTTACTCCGCTGTCATCCTGTACGATGAGCGGACGCCGCATGCGGACTCTGTGAAAGACGACAGCACCATTACTTTAGTGCTGAACGCGTTGTGTAGGGATGCCTTCGGGACTGACACCTATCTCCTGAAAGGGGGCTATGACAGGTTTTATTCAGAGTATCCTGAATTCTGTCTAAAAACAAAAGCTCTGTCCAGCATGTCGTCGCAGTCCAGCCTTGACGTGCCGGAGCCCAGCTGCACGTCCTGTGGCACCCCTCACCACGACCAGGGCGGTCCAGTAGAAATCTTGCCCTTCCTGTTCTTGGGCAGTGCCTATCACGCCTCCAAAAAAGAAATGCTGGATGCAATGGGGATCTCTGCCTTACTAAACGTGTCTTCAAACTGTCCAAACCACTTTGAAGGGGTCTACCAGTACAAGTGTATTCCGGTGGAGGACAACCACAAGGAGGACATCAGCTCTTGGTTTCTAGAGGCCATTGAGTACATAGACTCGGTGAAAGACTCGAACGGACGGGTCCTCGTCCACTGCCAAGCAGGGATCTCGCGTTCGGCAACCATCTGCCTGGCGTATCTCATGAAGAAGAAGCGCGTCAGGCTGGAGGAGGCCTTTGAGTTCGTGAAGCAACGGCGGAGCATCATCTCGCCCAACTTCAGCTTCATGGGACAGCTGCTGCAGTTCGAGACGCAGGTCCTCGCAACCTCGTGTGCGGTAGAAGCGGCCAGTCCGTCCGCAGTCAGGGGCAAACCTTCAACCCCTACGTCTCCGTTTGTCTTCAGCTTCCCTGTGTCCGTGGCGGTGCACTCCCAGGCAAACAGCCTCACGTACCTGCAGAGCCCCATCACAACCTCCCCGAGCTGCTGATGGCCGGGGAAGACGTGACCGGAAAACCGCCAAAGATACCGAACATTAGGCCTTTTTTTGGGGACTGCGGGACGTTCGAGGTGCGAGAGAACGGTGACTGCGTTGAGTCGGCGGTGAAGTATCGTTTTCTTGGGGGCACAGATTCTAAGTAAACTTAATAGAACTGGAGAACAGTCAgcttgagaagaaaaaatacagtttttgagtatttttcaaagttatttattaatattattgctcaGTGACATTGAGTTTTTGACTTGGTCTTAAAACTCCTTTTCTGGACTTGTATGTTTTTACGGTGTGCGAAGGTTGGAACGTTATTGTAGGCTAAACTCTTTTTCAACATCATAGGAAGAAAATGTCATTGCTCCCCTGCCCCAAACTAAAGGGACAGACATGTATGTtattgtccaatgcatttttattagtaAGCTGAAACATCCACAATGTGTCAAGTCAACATCACTTTTTCTGCCAAGTCTGTACAATTGTGACATCTTTAttgatttgcttgtttatttcctacatagctttttttaaataccaaagACCATTATATCAGTATGCTCATAGGCTTGATTTTCCATCCTGTTCTTAATGATATTGACAGTTGAATAGCTATAAATGAAGAAGGAATAATTCTCAAGCACAAAAGCACATATTCAGTATGTTTTCTAGACTCTAAATGAACCCTTACGtatgttatttatacatttacatcagtttctttctatttaaaaaataataacggAATTGGCACTTTACATAAGAGGAGTTAGAAGACGGTGTATGAAGTGATACTACCACAAGGTGCCAAATGCTGTAAAAAAGTTTGTATCTTAACAAGAGCATGGCTGAGCGAAggacagaaaaataatctgtgCAGGTTAGTGATTTTCATGACAGAACTCAGACCTACTGCAATGCTTCATCAAACTGGCCTGTTTTTGTCGGTGCCTTGTTCGTGGAGAAGGTACGTGCAAGTGTCTGGAGTTCACGGTCATTTTTTCTATTTGAGTGGGTTGTGACTGATGGCCTACAATAACAGGGAACTGATCCAAGCAAGCAGCCCTGACACAAAGTAGCATTTTAAATCTTCTAAACCGCAATACAGACTTTTGTGACCTGCTGTAAAGCTGTTTTTCTACTTTGCTGTagcttccatttttattttcttctctcaaGACAAAGCAATAACATTGACTGaggttgtctttattttttcagtttcctgTCATCACAAAAACACTAGacttgtattaatgtttttggcattttgttttcttcaaacttGTTTTCATACCTCATATGTGAATTAAGGAgaatcaatttgtttttcttttaagccTTATTAAGGTTTTTGATAATACTGGTCAAGAGCTTTTTACTTCTGGTTGAAGAGTGATTAGAGTGCTGGTGCTGAaagctgtgtttaaaatgtgtataggAGCTTCGGGGGGGAAAATGATGGTTCCTTTCCCTATGACTAATGCTACCAGACAACAATTAGAAAAAGCTTCTCTCCTTAGGGTGGAAGCTATGGTCCAAGTCTGAGGTGGATTGTTTGGTGTAAAGCATTGAGGACTCCACAGCCAACAGTGCAATTCCAAATTAGGAATTAGAACCACAGATCGAGTAGACTAATTTTCACCTCACCAGTTATTTACATGGTAGGCAGCTGGGTCATACAGCTGTTCATTTGAGTGTTTGCCTTAAAAGCTGaaaagtgctttttttaattcttctaaACATGGAGTTACATGCTTTAGCTTGGGTTTTCAGACAAAGAGCAAGCAGAGATGTTACTGAAATGTTGATCTAATGTTCTCCACTCCAGTTTCTGACACTTACAGAATGCTTCATTGGAATGACAGTTTCTAGAAATTCCTTGAAATATGACCTACAAAATGACAAGTATATTTGTTGGTTAATATGACTACACTGAACAACGGGCTTACTTAGTGCTCCGGAGAGAATTGGGAAATAAAGAGTCTTGCAGACATGCCCTCTTTCTGGAAAGCTCATGCAGGGTTTCTTTTTGCACTAGACTATCACAGTTTTTCAAGTTGGAAGCTTGTGATGTAACGGACAAATAAGCGAACCTCTCTGGAGAATCAAATCTGCTTTAAAAGGTATTAAAATGACAGAGAGCAGGAGAATAAGTCTATTCCACATGAGggtatttttataatattagtgcctatagaaagtctgcaCCACCTTgaactttcacattttgttgtcagtgacTCAGCGTTTGATccatttaaatgtcacattcacactttgaccagtcttggccgtaaaagcctgtagctcttgtaaAGTTGCCCTTGGCCTCTTGATAActtctctgatcagtctccttcttgctcagtcatccagtttggagggacggcctgatctaggtatggtcttggtggtgccacacaCCTTCCACCAAATAATAATCGTcctgactgtgctccaagggatattcagggctttttttgtatttttttaaacccatcccctgatctgtgcctttcaacaactttgtcccgaAGTTGAGTCTTTGATTTGAagattttactgtattttaattcaagGCTAAAAGGCAACAAAAAGTTAACACTTTGAAAGggagtgtagactttctataagtactgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtatataatacatacagtaaacaaaagACTCAGTATAGTAAAAGTAAAGAACCTgcatattaatcaaaatgtactACCACTCATCTTCAGTGAATGATGGGTTAGGGACACTGGGGGTCATATATAAAACCTGAGTTTTTGGCAACTGTTTTATTGGGTTTTTGTTAGCCTCTAGAACCAGTTTAAAGCTCCTGACCATTGTTTCTGAACCATGGAGAAGGTGAATTGTCAAGAATGTGGGCACCTTTTGTAGAGCACTTTTTAAGTGATGCAATACTGTAGTACAATTTATGTTTGATTTGCACAGTCTTTTGTTGATTCTATAGATACGAAGAGAAGATAGCTGACCACTTTTTTTACACCCATTTAAGTGTTTTAGgcttaatgataataaaaaagctgtacaactgtaaaaaaaataatgatggaaaaatgtaataatttatactTGTGTTTAGTGAAATATTGTCCGACTTCCCACGAGAAATGTCATTTATAACGATACGATTTTGGACTCTCCTTCGTTTTTGTCatagtatgttctttttttatttatttctggaaaTGCCACTTAAATAtgaattcattttcataa

Function

GO:

id name namespace
GO:0001714 endodermal cell fate specification biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0005654 nucleoplasm cellular_component
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K04459 DUSP, MKP; dual specificity MAP kinase phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99106 lncRNA downstream 4779 22681665 ~ 22694959 (-) True G79466
TU99051 lncRNA downstream 316608 22380734 ~ 22383130 (-) True G79430
TU99042 lncRNA downstream 391418 22308118 ~ 22308320 (-) True G79424
TU99019 lncRNA downstream 600950 22096838 ~ 22098788 (-) True G79407
TU99018 lncRNA downstream 607762 22091599 ~ 22091976 (-) True G79406
TU99134 lncRNA upstream 26606 22734995 ~ 22735440 (-) True G79483
TU99199 lncRNA upstream 388213 23096602 ~ 23097308 (-) True G79541
TU99200 lncRNA upstream 400464 23108853 ~ 23109092 (-) True G79542
TU99206 lncRNA upstream 432996 23141385 ~ 23145055 (-) False G79548
TU99207 lncRNA upstream 432996 23141385 ~ 23147069 (-) True G79548
AMCG00010277 mRNA downstream 169196 22452189 ~ 22530542 (-) True AMCG00010277
AMCG00010276 mRNA downstream 256209 22436424 ~ 22443529 (-) True AMCG00010276
AMCG00010275 mRNA downstream 267465 22428369 ~ 22432273 (-) True AMCG00010275
AMCG00010274 mRNA downstream 337884 22357982 ~ 22361854 (-) True AMCG00010274
AMCG00010273 mRNA downstream 345386 22350400 ~ 22354352 (-) True AMCG00010273
AMCG00010287 mRNA upstream 151289 22859678 ~ 22869451 (-) True AMCG00010287
AMCG00010286 mRNA upstream 279018 22987407 ~ 22996441 (-) True AMCG00010286
AMCG00010284 mRNA upstream 294626 23003015 ~ 23005446 (-) True AMCG00010284
AMCG00010285 mRNA upstream 335665 23044054 ~ 23047441 (-) True AMCG00010285
AMCG00010288 mRNA upstream 374266 23082655 ~ 23086345 (-) True AMCG00010288
TU98958 other downstream 717764 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 1617913 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 1758345 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 4753977 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 4844008 17852867 ~ 17855730 (-) False AMCG00010190
TU99198 other upstream 374457 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 651254 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 3664353 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 9245995 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 10287061 32995450 ~ 32999999 (-) False AMCG00010509

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00015231 False 2326 mRNA 0.43 4 NC_007125.7 15760253 ~ 15763648 (-)
grasscarp (Ctenopharyngodon idella) CI01000116_00061123_00063290.mRNA True 1975 mRNA 0.46 4 CI01000116 60383 ~ 63460 (-)