AMCG00010274 (rpl17)


Basic Information

Item Value
gene id AMCG00010274
gene name rpl17
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22357982 ~ 22361854 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010274
GTGTTAAATATGTTTAGGGCATATTGTTTAGAAGCGTATGTGAATGGATAAGTATGGATTTTCGGTAAATTTCTGTTTTGCCCCCACTGAGTGATACAATGGCCGACTGCCGGTGGCATTTTGCTGCTTTAGACTTAAATGCAGCATGTGAACGTCTTGTAAGCAATACAAATCGGTTATTAAAACTGTCTAAAGGCTTAAAGAGTAAACGAGAAACAGAGAAACTAGCCTGTTTGTGTGGACGTTCACACATTGGAAGCATCCGACACCCAACGTGGATATGATAGAAATTGCTAGGCCTGCTGCTTAAATCAGACTAAAACATGCGTTGTTTAAGCACCAGTTTAGTCTTTAAGTAACAGGATTTATCTATCATGTTTGGTCTGTCTGGGTTTTAATTAATtcgttttctgtttttacagtTAATCTCTCAAAATGGTCCGCTACTCGCTCGATCCCGAGAACCCAACTAAGTCATGCAAGGCCAGGGGTTCAAATCTGAGGGTTCACTTCAAGAACACCCGTGAGACGGCCCAGGCCATCAAGGGCATGCACATCCGCAAGGCCTCCAAGTACCTGAAGGATGTGGTGGTGAAGCGGCAGTGCGTCCCCTTCCGCCGGTACAACGGTGGAGTCGGCAGGTGTGCCCAGGCTAAGCAGTGGGGCTGGACACAGGGGCGCTGGCCAAAGAAGAGTGCGGAGTTCCTCCTCCACATGCTCAAGAACGCCGAGAGCAATGCTGAGCTCAAGGGTCTTGATGTGGATTCTTTGGTGATTGAGCACATCCAGGTTAACAAAGCGCCCAAGATGCGCAGGCGCACATACCGTGCCCATGGCCGCATTAACCCATACATGAGCTCTCCCTGCCACATTGAGATGATCCTCACTGAGAAGGAGCAAATTGTGCCCAAACCAGAAGAGGAGGTCGCTCAGAAGAAAAAGGTTTCCCAGAAGAAGCTGAAGAAGCAGAAACTCATGGCTCGGgagtaaatgtatataaaaaataaacaccccaAAAAAACGAGTACAAA

Function

symbol description
rpl17 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to several human genes including RPL17-C18orf32 (RPL17-C18orf32 readthrough).

NR:

description
PREDICTED: 60S ribosomal protein L17

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02880 RP-L17e, RPL17; large subunit ribosomal protein L17e

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010274 True 1031 mRNA 0.47 6 22357982 22361854

Neighbor

gene id symbol gene type direction distance location
AMCG00010273 nkx6.1,nkx6-1,LOC107700773,LOC107706438,LOC107722812 coding downstream 3630 22350400 ~ 22354352 (-)
AMCG00010268 NA coding downstream 281899 22069126 ~ 22076083 (-)
AMCG00010269 NA coding downstream 293627 22049997 ~ 22064355 (-)
AMCG00010270 NA coding downstream 314503 22030994 ~ 22043479 (-)
AMCG00010267 NA coding downstream 346190 22007414 ~ 22011792 (-)
AMCG00010275 NA coding upstream 66515 22428369 ~ 22432273 (-)
AMCG00010276 NA coding upstream 74570 22436424 ~ 22443529 (-)
AMCG00010277 NA coding upstream 90335 22452189 ~ 22530542 (-)
AMCG00010280 dusp4,LOC106563492,LOC106568147,LOC107591703,LOC107703586 coding upstream 337884 22699738 ~ 22708389 (-)
AMCG00010287 NA coding upstream 497824 22859678 ~ 22869451 (-)
G79424 NA non-coding downstream 49662 22308118 ~ 22308320 (-)
G79407 NA non-coding downstream 259194 22096838 ~ 22098788 (-)
G79406 NA non-coding downstream 266006 22091599 ~ 22091976 (-)
G79405 NA non-coding downstream 273418 22084247 ~ 22084564 (-)
G79404 NA non-coding downstream 278541 22079203 ~ 22079441 (-)
G79430 NA non-coding upstream 18880 22380734 ~ 22383130 (-)
G79466 NA non-coding upstream 319811 22681665 ~ 22694959 (-)
G79483 NA non-coding upstream 373141 22734995 ~ 22735440 (-)
G79541 NA non-coding upstream 734748 23096602 ~ 23097308 (-)
G79542 NA non-coding upstream 746999 23108853 ~ 23109092 (-)
AMCG00010271 NA other downstream 375932 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 785470 21541019 ~ 21572512 (-)
AMCG00010247 NA other downstream 1276157 21053624 ~ 21081825 (-)
G79147 cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741 other downstream 1416589 20931171 ~ 20941393 (-)
AMCG00010234 hint2,LOC106585387,LOC107720264,LOC103469931 other downstream 2162598 20188658 ~ 20195384 (-)
AMCG00010288 NA other upstream 720801 23082655 ~ 23086345 (-)
G79601 NA other upstream 997789 23359643 ~ 23364947 (-)
AMCG00010343 hook3 other upstream 3154210 25516064 ~ 25556080 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 4006078 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 4050356 26412210 ~ 26426658 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018817 NA non-coding NC_007132.7 CM002905.2 18997481 ~ 19067517 (+)