AMCG00010277


Basic Information

Item Value
gene id AMCG00010277
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22452189 ~ 22530542 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010277
ATGTCCTTGGCGTTCACATTCCCGGAGTCCACCAGCCTCTTGACTCGGGATACATCTCCGTTACGGCAGGCCTCAAAGAGCTCCCTGAAAGCCCCGCTGGCCCCGCAGCCGCCGTCCCCGGGGCTGGTGCTGCCCGAGTCTGGACTTGAGCCGCCGCTGCTGCCCCCGCCGGTTGTTGTGGTGGTAGAGctagtgctgctgctgctgctgagggCCGGAGCGGGGAGATCGGGGGAGGCCGGGGTGATCTCCGTATCCCCGCTGCTGTCTTGCTCGGCGCCCGCCGGAGCCGCGGCCGCAGCTCCCGTCGGTGCCGATGGAGAGCCCGGGGGAGGGACTGTGGGCGATTCGCTGTCTCTCTTGGCATACGGTCAGAGTCTGCAGtgtcactactactactacctcAAACACGGAAGAGCCATTCCAGTATTGATCTCGGGGTTTGGACCGTCTGCAGCCCGGGCATTATCACGTGATCATGCACTGATCACTGGCCGGGGGCGCGGCGCCCCATTGGCCGACCGCGAATCCGCCGCCAGTGTCCTAGGCTTTTTCCCTCACAAGTCTAGCATGCCCATAGAATTGGCCATGCCTCTGTACCTGGCGAGAGATGACTTCTGTTACAAGAGGGGGCCCAAGCTGGCCAAGCCTCTGCGGCCCTGCATTCACCAGAGCTCCAGCCAGAATGTCAAGCAGCAAGAGGTCAGCAGTCGCTCAAGCGGGGTGTCCAGAGCCAAGAAACAAGTGTCCTTCGCTGACCACAAGGGGTTCTCTCTCACCGTGGTCAAGATCTTCTCTGAGTTTGAAGACCCCATTGACATCCCTCTCAACATACAGGAGCTCATCGACACAGTGGTGAACATGTCCTTAGAGCAGGACCGCCTACTCTTGGACTTTGCCCAGCCCTCTGCAGACTACTTGGCCTTCCGCCAGCGGCTGGAGAGTGACCGTGTGTGCCTGGAGAACTGCATGCTGAGAGACAAAGCCCTGGTGGGCACAGTGAAGGTGAAGAACCTGTCCTTTGAGAAGTCCGTCAAAGTTCGCATCACTTTCGACACCTGGAAGAGCTTCAAGGATGTGGAGTGTCAATATGTGAAGGACACTTACACGGGCTCCGACCGGGACACCTTCTCCTTCGAGATCGGCCTGCCCAGCAAAATCCCCCCTCATGAACGTATTGAGTTTGCCATCTCCTACGAATGCAATGGCCTGACCTTCTGGGACAGCAATCGGGGCCAAAATTACAAGGTGGTCAGATCAGTGCTAAAAAACACGTGTCAGAATGACATCAACGGAGACCATCACCAGCGAAACCAACAAGCGTTTGAGGAACTGGGGATTCATTTCGACCAGTATGGCAGCCCCAGGTGCTCGTATGGAATCTTCCCAGAATGGCCGAGTTACGCTGCTTACGAAAAAATTGGGCCTTACTATTAACCTTGTCGTCGTTGAATGTTGATCCAGGTTTGAGTAGGTAGTCTAATGTTGCCATTGTCTGTGATTATGTTTAAAATGGAGAACCTGTGCAAAGAGCTCTGAAGAGTGGTGAGGTAACATTCACTGTAGGGACCTCTGACAAGATGAATAGTACAATGAGACTGAAAGTTGTGTGTGAATTGAAAAGTTGGGAGATGGACACTCTTTGAATTCAATCTGAAGAGAATGATCCTTGTGGATTCCAGTTTCATTGTAAAAAGAGAACCTTCAACCTTTTTCAATTTATTCGGTGCAATACTCTATGCTTCCTGTAATCTATTAAGGGAACATTTTTGAAGCCAGTATTTATTGTTGTGACGGGGGACATGAGACTTGACACTCGGGAttatatgcaaatgtataaataacgGCTTCTGACTTTATCTTTTGCTGCTATTGTTTATGAAAGCGTGCAAGCTAGCTATTCAGCGACTGCGGATGGGGAGCACACGACATTCAGAAGGAAGAAAGATGCAGCCAATGGACTATCACACTTGTCTGCTGTAGCATTATGCAATACTTTTTCTTCAAGCCCAGTGGGCGTACAATTAAGATTCACTACTCGgggaaaaggtaaaaaaaaatggttaggcttgttttgatttatttataggtCTTTTCAGTGTATATAGCTGTACCATTTACCTTCTGCTCAAAAATAGTTTCACTTAAACTATGGTACATTCTCCTGAAAGATCTTGCTTTTTGCACTCAAAGgaagattctttttttttttaattgacagagACCATTTTGTAACCAGGATGGGAAATTGCAATATTCTGCTGGAAGAGTGAAATATGGAGTGGAGAGGGGTGGTTCTTGTCTAGATAGTATGGTTTCTGCAGTGCAGGAATTATCACTTGTCCCATTAAAATAGCCATATTTCCTTTGCCTAGCTAGAAAAAAGGGACTTGCCATCACTGCTGAAGCATGAAGTTGTTcaaattttgttttgaatgaattTTTTGCATATACTTGgctattacatttttaattatttttccatgtaATATGTCTGATCTCGTGTTCGTTCAGTAGGGCCAGAAATATTATCTCCGTACACAAGGCTTTTTTTCCTCGGTTAGCTCAATGCATGTAGCTCAAATCTAGAATTTAGTGTTTCTCCCCCCCCAATTCCTTTTGAGATGTAAATCCTTGTGAACAttgttaattaatacattttaacattaatccCTCATCTGAGAGCTCcctctgtaatttatttttttaaagagaaaacaaattatattaatacaatcgTCCCATTAAAATCCCTTTCCATgtttcaaaaggtttttatgaACAAAGGAATCAATATCTAGATTTTGTTCTTGGCATTTTTGTCATGGTGTTTGAGACTCTTATTAAAGTAAATGCCCTCTGTTCACCTATGATGTGGTGGAAATGCACAGTGGTCTGTGGCTTTCAGATGAGCTGAAACAACATCAGTCCTGTGTTAAGAGTTCTAGACCTGCACATTAAGAAATCCGATGTGCAAATTTTTATGGCTACATTGTACGCTGCAGTTTTCCCTTTGCAAAACCTACAAAATGAGAAGGTCTTGTACATTTGTAACTGGAGAGTTTGCCCTTTTTGCAACGTTGAAAcaagtgttattttaaaaggtaaatataCTAAAGAGCATGAGTTGAGCAGAGTGCATGTGGCACAACCCTTTTGTGGAAAGatggttatatatatttttttttaaagaagaatggttggttaaaaaaataaatgtatgaaactttttaaattgttaatattCAGCAAACTAAAAGGGTAGCGAcactgttttgtatgttttaatagcATTATTTGCTGATCAGAATGCATTTTCAGAGTGACCGTTCTATGGTGTTTTACTAGGTTTATGCTAATATGTAAGGGGGTTACATTTAAGGGAAAACCATTTTAtcactaactttttttttcctttttcctctaGTTTTCTTATCTTAGGGCTggaatgtaataaacattttgtcctcccacccaaaaaaaaaatcaaaagataTGTCTGCCGTAATATGCCATTTTGAAGTCTAAATGATTAAAAAGCATCGGGAACATATAGAACTGTCTGGTGTTTGTTCTTCCATTGGCAATCGGAATGttaaaatgagagaaaatgttGACCTAGTTCCTGCACTTTAAACTAGATATAACAACACTATTTCACATAGAAAGAATGGGTGAAGTCTGAGTACTAACCACTATAAAAGGGAGATATCTATGTGAATAATGTGAAGTAGTTTTGTGTTTCGGTCTTTGTTCCTCTTGGAAATGCagttaattttacttttatcaTGTTTCGTGTTTTGAGGATGTTTCACATGTAAGTGTGCACTGTAGTACTAATTCACAAAACTAGACTCACTCATTAGATGCTATTACACGCCAGCTCATTCAGTAATGGTAGGGgaagtggtgtgtgtgtgcatgcacaGTTCATTGGAAgctcttcatttaaaaataaaacgatACAAAATTTGTAATGGTTTCATAGACATTTCCTAGAACTTCTGTTATGATGTACTGAAATTTAGTTTGCTTGTTATGCTAAAAAGTGCCTTGTACTATAAGCTTTGATCAAAAGGATCCCTTGGTACATTTGTGtatggggggcggggggggggcacttttaattaaaatgaggtAAGAATTCATCACTTTTTTTGAGGAGACAATggaatattttatgtaaaaaaaaaataaggaaaagattaa

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010277 True 4209 mRNA 0.43 4 22452189 22530542

Neighbor

gene id symbol gene type direction distance location
AMCG00010276 NA coding downstream 8660 22436424 ~ 22443529 (-)
AMCG00010275 NA coding downstream 19916 22428369 ~ 22432273 (-)
AMCG00010274 rpl17 coding downstream 90335 22357982 ~ 22361854 (-)
AMCG00010273 nkx6.1,nkx6-1,LOC107700773,LOC107706438,LOC107722812 coding downstream 97837 22350400 ~ 22354352 (-)
AMCG00010268 NA coding downstream 376106 22069126 ~ 22076083 (-)
AMCG00010280 dusp4,LOC106563492,LOC106568147,LOC107591703,LOC107703586 coding upstream 169196 22699738 ~ 22708389 (-)
AMCG00010287 NA coding upstream 329136 22859678 ~ 22869451 (-)
AMCG00010286 NA coding upstream 456865 22987407 ~ 22996441 (-)
AMCG00010284 NA coding upstream 472473 23003015 ~ 23005446 (-)
AMCG00010285 purp,LOC105909220,LOC107708540,LOC103036944,LOC107703584,LOC108436665,LOC107681187 coding upstream 513512 23044054 ~ 23047441 (-)
G79430 NA non-coding downstream 69059 22380734 ~ 22383130 (-)
G79424 NA non-coding downstream 143869 22308118 ~ 22308320 (-)
G79407 NA non-coding downstream 353401 22096838 ~ 22098788 (-)
G79406 NA non-coding downstream 360213 22091599 ~ 22091976 (-)
G79405 NA non-coding downstream 367625 22084247 ~ 22084564 (-)
G79466 NA non-coding upstream 151123 22681665 ~ 22694959 (-)
G79483 NA non-coding upstream 204453 22734995 ~ 22735440 (-)
G79541 NA non-coding upstream 566060 23096602 ~ 23097308 (-)
G79542 NA non-coding upstream 578311 23108853 ~ 23109092 (-)
G79548 NA non-coding upstream 610843 23141385 ~ 23147069 (-)
AMCG00010271 NA other downstream 470139 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 879677 21541019 ~ 21572512 (-)
AMCG00010247 NA other downstream 1370364 21053624 ~ 21081825 (-)
G79147 cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741 other downstream 1510796 20931171 ~ 20941393 (-)
AMCG00010234 hint2,LOC106585387,LOC107720264,LOC103469931 other downstream 2256805 20188658 ~ 20195384 (-)
AMCG00010288 NA other upstream 552113 23082655 ~ 23086345 (-)
G79601 NA other upstream 829101 23359643 ~ 23364947 (-)
AMCG00010343 hook3 other upstream 2985522 25516064 ~ 25556080 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 3837390 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 3881668 26412210 ~ 26426658 (-)

Expression


Co-expression Network