AMCG00010276


Basic Information

Item Value
gene id AMCG00010276
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22436424 ~ 22443529 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010276
AGAAGAgctcattttgaaatgttatagatttattttaaacgcATACGGGTGTGACTTTTGCTTCAGCAACGGAAATAAAGAGATTAGATGCCAACATAATGCTCAGTTTGTctgcaatataatataattttagtattttttttattgatccccaagtttaaattgaatatatcAGATTGCAGGGGACTGTGGAAGCACCAGCTGGTAATATAGCGGGAACGTGTCTGCTGAGGATAATAGCTGTGTACTCTGTGATAATTTAGACATCGGAGCTGATCCATTTTACCCAACATGATAATGCAGGACCAGAAGGAGAATATAAAAACGCAAATTGAAAACAAGCTGCAGTTTACTACTCCAGAGATGCGAGACAATGTTGAAagcAAGTCCTGCTGTAGACCAGATGGCGCTGCAGAAGAGGCTGCTGACTGCAGCGTCCCCAGTAAAAGTGATTTCAGCGACCCTGTGTACAAGGAGATTGCCGTCGCCAATGGCCACATCAACAGGATGAACAAGGATGAACTCCGCACCAAGCTGGCAGAGTTAAAACTAGAAACCAGGGGTGTCAAAGATGTGCTAAAGAAGAGGCTGAAAAGCTACTACAAGAAGCAGAAGCTGATGCAGTCTGTGGTGGCGGAGAACAACAGCACAGACACGTACTACGACTACATCTGTGTGGTGGATTTCGAAGCCACCTGTGAGGAGAGCAATCCACCCGATTATCTCCACGAGATCATCGAATTCCCCATGGTCCTCATCAACACACGAACCCTGGAGATGGAAACCGTGGACAAAGCTGACACCTTCCCTGATGTTCTTCAGAAGGTTGTGGTCTGGCTTCAGGAGAGAGAACTgggaacaaaatacaaatacgcAGTCTTGACCGATGGatcctGGGATATGAGTAAATTCTTAAATATTCAGTGCCGGGTAAGTCAGATCAGATATCCTCAATTTGCCAAGAAATGGATCAACATCCGCAAATCCTATGGGAACTTTTACAAGGTGCCCAGGACTCAGACTAAGCTGAGCAGCATGTTGGAGAAGCTGGGGATGAAGTATGAAGGCCGGCCTCATAGCGGCCTGGACGACTCCCGCAACATCGCCCGCATCGCCTTGCGCATGCTCCAGGACGGCTGCCAGCTGCGGGTCAACGAGCGCATGCACGCCGGCCAGCTCATGAGCGTGCCCAGCTCGACGCCTATGGAGGGAGCCCCAGCCCCGTGCCCGCCTCGCTACCGGAATTAACCTCCCAGAATGTCGGGGACTCGTCCAGAAAGCCTTACCTTGaggacatttttgtgttttttaatagtgAGGATCCTTTCATGGCTTAATCTTGTATGGTTTTGCACTTTTCCACCTCCACAGCTGTTTTGCACAGCTTTTCAATGGTAGACCAGGGAGGGGTTTCTTCAGTCCCTGAATGCCACAGGGTCCCCTGGTTTTCGTTTGTCCTCATTGCATGaaattcactttttaattggaaaagtCTGAGCCAATTGTTCTTTCCAGTTACCAGTGGGAAGGTGTGTCGAAAGCTCGCAGGAATCAGCCCCTGAGGGCTGGAATTGCCAAGAACAAGTTCAGTGTAGTGAAGGGTTCAGGGGGAATGAAAATCTTAATATCCTGCCTCACGAGGGTGATCCATGTGTGTGGCTGTATTTACACACATGCCTGCTCTGCAGATCGTAACTGGAAACAACAAGTGATGTTCAGAGAGGCTGGAAGAAAGTGTGTTCCTCCTTCCACACATCTGTGTCTGGCTAATAGTCTCCTTTTTAAATAGAGGATGAATACTCCGCTCTGGAGAATGTCAGTGTAGCTGGCTTTATTTCAACACTGTGAGACTAATGGGTAGCAGACTGAGCAGTTGAGCCTTATCACTATGCATCCTTTCTTCGCACTGTATCATTTTGCGGTACTGCCGTTCTGTGGACCACTGGAATACCACGTACCACAGGTCTTCATAAACTTGGTTATTAGACAGTGTTTACTTTCAATTTCATTAACTGCAAACATGGCagtatattatgattattaaagaaaaaaaaactgggatATGGTCCATGTGAAGCTTatcaatttcacattttaatgctGCTCTACCTCTTTAGAGAACTCTCCATAAATCCTCAGAGCTATGCCTTAAAACAGTGCTCTTTACCAAACCAGTAACCCGATGTTCCTGTAAGCGAATATCACAGTCCAAGAACACGgtcctgtatgtgtgtgtcgcTTCATTAAGAGAGTGTAACTGTTACTTTTCATTGTTCTTATTACGTTTATCTGGGGGCCGCGTCATCCGGGCTCCTGTATGTCTGATGTTACTTGTGGCCTGTGGAGCCACACTTCAGGAACACAGACTGAACAAAAATGCCCGCTTGGCATCATAGTAGTGATGGCATTGAACTTCAAACTTTTAAGTCTTGATGTGATCAATAAAAAGAAACCGGCCCCTTTCTTAAACAGCAGAAGCAACATGTGGTTCTATATAGTACTGTATTGTTTGGAATAAGTCTTTTAGATCCTGAATGCAATTGTGTACCacactgtttttctgttgtgtatCTGTTAAGCTATTACTAAGACATTTTAACAAGCCTTCATTGTACAAGAAAGTGCTTCAGTATGTATCtccatgggaaaaaaaaagtattttgcattgctgctgacttcaaaactgaaaatagcTGAGACAGTCTTAAGTAGCTTTGTGTTATTTATGGGTACTTTTCTAGGACTGAGAGAAACTACATTTTCAGcaggaatgtttttatttcctaatTTGCATTTCTGACAAAACCTTTCCAATGTGTGAAATGCCAGTAGGAAAGTCAACAGCCTTTCAAACAGACTAACTGTCAGATTTCGGTAAAGTTATGAGTAGTGTTTTGAATAAGAATGTCCGTCCgactttataaattaattttgttagtttttgacTCTTCCCACTTCACTTCATAGGTTCTCCATAATCATTAACCTAACAAAATGAAagactctgctgctgctgctgctgctgctttgtaATGTCCAGAGATAtatgggattttattttagagattcattaaataaacattttaaaatgctaagtTCCTGATTtcttacttaaaaaatatgagGTAGCCTGTATATGTGTAGGCCTGTTTCTTATTACATATCTTAAATGTTGTTAGAGATTTTTGTCCAATTTCTGTTAATTGTTTCTCCACACTAATTAACCTTTGAAGCCAAAGTGAAATTGCTTGGTGAGTAAACAGACACTGAATCTGAAGCTCATGATAAGGGTTTGTTGTAGTCGCACAGATGgcattttctgttcttttccaGACTTGGCTTGGTTGAAAAGAAACCGTAAAAGTGACTACTGCAATAAAAAGTCAACATCTAAGGAAGGTGGGTGAACTTTTCCTGTATTTAAAGGTTAATTCATTCAAAGCTGAAGCTAAATTCTGCCCCAATTTATAATccctcttaaaaataaataaaaggacaactgaaataaatttgACTTCATCACAGTTTCATGAGTCATATTGTCAGTATTAATCCTTCCCGG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K18416 THEX1, ERI1; 3'-5' exoribonuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010276 True 3562 mRNA 0.42 6 22436424 22443529

Neighbor

gene id symbol gene type direction distance location
AMCG00010275 NA coding downstream 4151 22428369 ~ 22432273 (-)
AMCG00010274 rpl17 coding downstream 74570 22357982 ~ 22361854 (-)
AMCG00010273 nkx6.1,nkx6-1,LOC107700773,LOC107706438,LOC107722812 coding downstream 82072 22350400 ~ 22354352 (-)
AMCG00010268 NA coding downstream 360341 22069126 ~ 22076083 (-)
AMCG00010269 NA coding downstream 372069 22049997 ~ 22064355 (-)
AMCG00010277 NA coding upstream 8660 22452189 ~ 22530542 (-)
AMCG00010280 dusp4,LOC106563492,LOC106568147,LOC107591703,LOC107703586 coding upstream 256209 22699738 ~ 22708389 (-)
AMCG00010287 NA coding upstream 416149 22859678 ~ 22869451 (-)
AMCG00010286 NA coding upstream 543878 22987407 ~ 22996441 (-)
AMCG00010284 NA coding upstream 559486 23003015 ~ 23005446 (-)
G79430 NA non-coding downstream 53294 22380734 ~ 22383130 (-)
G79424 NA non-coding downstream 128104 22308118 ~ 22308320 (-)
G79407 NA non-coding downstream 337636 22096838 ~ 22098788 (-)
G79406 NA non-coding downstream 344448 22091599 ~ 22091976 (-)
G79405 NA non-coding downstream 351860 22084247 ~ 22084564 (-)
G79466 NA non-coding upstream 238136 22681665 ~ 22694959 (-)
G79483 NA non-coding upstream 291466 22734995 ~ 22735440 (-)
G79541 NA non-coding upstream 653073 23096602 ~ 23097308 (-)
G79542 NA non-coding upstream 665324 23108853 ~ 23109092 (-)
G79548 NA non-coding upstream 697856 23141385 ~ 23147069 (-)
AMCG00010271 NA other downstream 454374 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 863912 21541019 ~ 21572512 (-)
AMCG00010247 NA other downstream 1354599 21053624 ~ 21081825 (-)
G79147 cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741 other downstream 1495031 20931171 ~ 20941393 (-)
AMCG00010234 hint2,LOC106585387,LOC107720264,LOC103469931 other downstream 2241040 20188658 ~ 20195384 (-)
AMCG00010288 NA other upstream 639126 23082655 ~ 23086345 (-)
G79601 NA other upstream 916114 23359643 ~ 23364947 (-)
AMCG00010343 hook3 other upstream 3072535 25516064 ~ 25556080 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 3924403 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 3968681 26412210 ~ 26426658 (-)

Expression


Co-expression Network