RNA id: AMCG00010285


Basic Information

Item Value
RNA id AMCG00010285
length 612
RNA type mRNA
GC content 0.53
exon number 4
gene id AMCG00010285
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23044054 ~ 23047441 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTACTCCAAGCTTTCCCTTCTGGTCGTCATTCTCTGCTACATCGAGGAGTGCTGGTCTGCCTCCTGTGTGGTGGACAGCTTCACAGTAAAACAGGATTTTGATCCAAAGAGGTATGCAGGAAAATGGTACGCTCTGCAGAAGAAAGACCCAGAAGGCCTCTTCCTTCAAGACAACATCTCTGCCGAGTACACGATCGATGATGAGGGTGTCATGACAGCTTCCTCCAAAGGCAGGGTCAAGCTTTTTGGGTTCTGGGTTGTCTGTGCTGACATGGCTGCCCAGTACAGTGTGCCTGACCCTACCACTCCTGGAAAAATGTTCATGAACTACCAGGGCCTGGCTAGCTATCTGTCCAGCGGAGGTGACAACTACTGGATTATTGACACCGACTATGACCACTATGCCATTACTTACGCCTGCCGCTCTCTGAAGGAAGATGGCACCTGTGAGGACGGGTACTCTCTGATCTTCTCCCGTAACCCTCGTGGCCTACCCCCCGCTATCCAGCGCATCGTCCGCCAGAAGCAGGAGGAGATCTGCATGGCCGGCCAGTTTGAGCCTGTGCTGCAGTCAGGTGAGTGTACAGCCTCTGCAAGCACACAGTGA

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0005576 extracellular region cellular_component
GO:0005501 retinoid binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99134 lncRNA downstream 308614 22734995 ~ 22735440 (-) True G79483
TU99106 lncRNA downstream 349095 22681665 ~ 22694959 (-) True G79466
TU99051 lncRNA downstream 660924 22380734 ~ 22383130 (-) True G79430
TU99042 lncRNA downstream 735734 22308118 ~ 22308320 (-) True G79424
TU99019 lncRNA downstream 945266 22096838 ~ 22098788 (-) True G79407
TU99199 lncRNA upstream 49161 23096602 ~ 23097308 (-) True G79541
TU99200 lncRNA upstream 61412 23108853 ~ 23109092 (-) True G79542
TU99206 lncRNA upstream 93944 23141385 ~ 23145055 (-) False G79548
TU99207 lncRNA upstream 93944 23141385 ~ 23147069 (-) True G79548
TU99264 lncRNA upstream 279547 23326988 ~ 23327361 (-) True G79594
AMCG00010284 mRNA downstream 38608 23003015 ~ 23005446 (-) True AMCG00010284
AMCG00010286 mRNA downstream 47613 22987407 ~ 22996441 (-) True AMCG00010286
AMCG00010287 mRNA downstream 174603 22859678 ~ 22869451 (-) True AMCG00010287
AMCG00010280 mRNA downstream 335665 22699738 ~ 22708389 (-) True AMCG00010280
AMCG00010277 mRNA downstream 513512 22452189 ~ 22530542 (-) True AMCG00010277
AMCG00010288 mRNA upstream 35214 23082655 ~ 23086345 (-) True AMCG00010288
AMCG00010289 mRNA upstream 57419 23104860 ~ 23105966 (-) True AMCG00010289
AMCG00010294 mRNA upstream 117526 23164967 ~ 23168709 (-) True AMCG00010294
AMCG00010296 mRNA upstream 128333 23175774 ~ 23201168 (-) True AMCG00010296
AMCG00010295 mRNA upstream 165839 23213280 ~ 23229997 (-) True AMCG00010295
TU98958 other downstream 1062080 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 1962229 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 2102661 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 5098293 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 5188324 17852867 ~ 17855730 (-) False AMCG00010190
TU99198 other upstream 35405 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 312202 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 3325301 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 8906943 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 9948009 32995450 ~ 32999999 (-) False AMCG00010509

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038455 True 1459 mRNA 0.43 6 NC_007132.7 20339143 ~ 20342096 (-)
grasscarp (Ctenopharyngodon idella) CI01000006_07477200_07478617.mRNA True 1260 mRNA 0.46 3 CI01000006 7476928 ~ 7478786 (+)