RNA id: AMCG00010289


Basic Information

Item Value
RNA id AMCG00010289
length 1107
RNA type mRNA
GC content 0.49
exon number 1
gene id AMCG00010289
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23104860 ~ 23105966 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATCAAGTACTTCAAGAAACACATACATGAACACCTGGAAGAATGTCGGATCAGGAGGACCAGACTGGTGTCTAAGGATGGGCACTGCAACATAGAGTTCAGCAGTGGGGAGTACCACATACTCTTCGCCTTCTTAATGGATTTCTGGAACACGTTCGTGGAGATCCGCTGGCGCTACGTTCTCTTCATCTTTTCTGCCTGCTCGATGGGCAGCTGGTTCACCTTCGGGCTGCTCTGGTACTCTGTTGCGAAGAACAACGGTGACCTTCTAGAGCAAAACCCCCCTGATAATCATACCCCTTGTGTGTACAATGTCCATGGACTCACCTCcgctttccttttctctctggAAACACAGACAACCATTGGATATGGTTACAGGAGTCTGACAGAAATTTGTGGGACAGCAGTCACCCTACTCATTACCCAGTCCATCATAGGGGCTGTCATCAACTGCTTCATGTGTGGAATAATTTTGTCCAAAATGTCCCTGCCCATGAAAAGAGCCAAGACTGTCTCCTTCAGCCGGACTGCAGTCATCAACAAGCAGGGAAATAAGCTGTGCCTGCTCCTGCGGGTGGCCAACCTACGCAAAAGTCTTCTCATTGGGAGCCAGATTTATGGAAAGCTCCTGACGACCTCTTTGATTCCTGATGGGGAAACGATCATCTTGGACCAAGTGAACATCGACTTCACGGTAGATGCTGGTAAGGACAACCTATTCTTCATTTGTCCTCTGACGCTGTGCCACGTCATTGACAAGACTAGTCCCTTCTTTGAGATGTCTGTGGACACACTCCACATGCAGGACTTCGAACTGGTGGTTTTCTTAGATGGTACGGCCGAACCCACCAGCTGCAGCTGCCAAGTACGGACTTCCTTCCTCCCGAGGGAGATCCAGTGGGGCTACACCTTCCTGCCCATAATTTCTCGAACCAAGGAAGGCAAATACAGGGTGGACTTCTCCAACTTCAACAAGACCAAGCAGGTGACCACTCCACACTGTGCCAAGTGCTTCTACAATGAGCATGAACAGAAAGGAAAGGACAACCTGGGTTTTGAGGAGATTGAACCCAATGATGCAGCTGATAATACAAACCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99199 lncRNA downstream 7552 23096602 ~ 23097308 (-) True G79541
TU99134 lncRNA downstream 369420 22734995 ~ 22735440 (-) True G79483
TU99106 lncRNA downstream 409901 22681665 ~ 22694959 (-) True G79466
TU99051 lncRNA downstream 721730 22380734 ~ 22383130 (-) True G79430
TU99042 lncRNA downstream 796540 22308118 ~ 22308320 (-) True G79424
TU99200 lncRNA upstream 2887 23108853 ~ 23109092 (-) True G79542
TU99206 lncRNA upstream 35419 23141385 ~ 23145055 (-) False G79548
TU99207 lncRNA upstream 35419 23141385 ~ 23147069 (-) True G79548
TU99264 lncRNA upstream 221022 23326988 ~ 23327361 (-) True G79594
TU99265 lncRNA upstream 221532 23327498 ~ 23328969 (-) False G79595
AMCG00010288 mRNA downstream 18515 23082655 ~ 23086345 (-) True AMCG00010288
AMCG00010285 mRNA downstream 57419 23044054 ~ 23047441 (-) True AMCG00010285
AMCG00010284 mRNA downstream 99414 23003015 ~ 23005446 (-) True AMCG00010284
AMCG00010286 mRNA downstream 108419 22987407 ~ 22996441 (-) True AMCG00010286
AMCG00010287 mRNA downstream 235409 22859678 ~ 22869451 (-) True AMCG00010287
AMCG00010294 mRNA upstream 59001 23164967 ~ 23168709 (-) True AMCG00010294
AMCG00010296 mRNA upstream 69808 23175774 ~ 23201168 (-) True AMCG00010296
AMCG00010295 mRNA upstream 107314 23213280 ~ 23229997 (-) True AMCG00010295
AMCG00010303 mRNA upstream 272394 23378360 ~ 23385105 (-) True AMCG00010303
AMCG00010308 mRNA upstream 293385 23399351 ~ 23416520 (-) True AMCG00010308
TU99198 other downstream 18875 23082846 ~ 23085985 (-) False AMCG00010288
TU98958 other downstream 1122886 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 2023035 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 2163467 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 5159099 17945235 ~ 17945761 (-) True G78610
TU99273 other upstream 253677 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 3266776 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 8848418 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 9889484 32995450 ~ 32999999 (-) False AMCG00010509
TU101930 other upstream 12608985 35714951 ~ 35716672 (-) True G81716

Expression Profile