G79595


Basic Information

Item Value
gene id G79595
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23327498 ~ 23331515 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU99265
atgcagaatatttATGTTTCACCTTACAAGAGCAAAAGCTGCAAACCAACACAAGCATTTCACCAATGATCACTGTCATACATGGCTATGTAGTGCTAATTCAACAAAGAACAGTGCAAAGAAATGCCAGATAGTAATCTATGGCATCCTATATCCTAATGGTTTAATtctatattttcaaacatgaatgccagttttgtatgtttgcagAAAGTAGGAACAGCACACAAAGCTGAAACATTATCCCTGTTTCAAACTGCCACAGTTTGAAGAGCCGAACTGTGTTGTGGttttaccattattttataCAGGCTAAACTGAGACCAGAAAACCGAATCCACATTGTGGCCTGTCCTGATCCTGATCCCCAAATGGCAGCGCTGAAAGTCTAAATAGACTCTACACATTCCCCTAGCAATGACTATTAACACTGGCATGTGATAAACTTACCACAACTTTGTACTTTACTACCTCTAATCAATGCAAGACAATCGACTATGGGACAGATTCATAGAACCCTCATGGCAACGCCTGGTTTTCATAACgagggaggaaaaaacaacaaaaaataactggAGTCTCATACACAacttaataaaattaaacaagaaattaaattattggttttcctattgtttaaaaaagggacattacattaaaagaatttaaagtttaaatatgGTCCTAAGTCTCTTTAAGTACAGTGAGAATGGATCAAGTATTAACATTTCACATTCAGTCCCTAGACATTATATTTTCTTGGTAAGAGAAAGTCCCAACAAACCTGACAAGtaacaaataattaacaaagtgtttacaaagacaaaagcaaatGTTCTCAAAGTGGAAGATCTCAGAATGGAATATCCAGGTTCTTCAGGATTTAACTGGTACTGTACTGCTACAAGAAGGTTCTTTCAGCCATTTCAACTATATAGCTACATTAAACTATTATTAGTTTACTCACAAACTGAAATGTTGCCGAAACAGTGATTTAATACTAAGATTGAAAGGTTCAGGTTAACCAGcaggaatacaaaatgtaccTCACACCTTTCCACATACTGAAGGGATCAGTCTGAATGAATGCCAGGCCGTGTGTTaggttttcaatttgaaatttaataaaacaagtcGAATGACTCCTGTGCAAATTAATCAGTTGAAACGTAAGCAAATCAAAACCAATGAAATATGCCCAGGTGCAGTAATcctaatatttaattaatctgtctgAATAACTGTCAGAGTACATTACCAATATATTTTGTGAGCTGGAAGAACTAAAATGTCCAAGGCTTACACTAGCAATAACTCGTTTAAGatcattgttgttgttcctgctgctgctgctgctgtcggGGGATTAGCCCACCATCCTGTGCGGTGTTGTAGGATCCACAGCTGCTGCACTTCATTCCCAGAACATGGAAAAGCACTGTGCAGTGAGTCTGGCAATCGTTACACATGAT
>TU99266
CCAGGGCTATTTTATTTCCTACTGTCAATGGCTCCATGGATGTCATCAGGAGAACcacaacacttttttccaatcatatgacaataaatacaaatctttgaCTGTGGCATGTAATGTGTGTAAATCTGTTTAAAGTACTTGATCCTAGGAGGTATGGTTCATTAGACAATTTTGCAAATTGCATGCAtcttataaagaaataaaaagactaAATTAGAGGTGGTGTACATAACCAAAGTAGcttgtgtaaattatatttttattctcacATTATAATTAAGAGTATTGCTTGTTTAACATCATACGTCTCTTCAAAGATGATCCACCTCCACTGACTTGGCCACTactggcactggcactggcacAAAAGCTGCTTTAACTATAGTAGCAACCGCACAATCAATTACTCTTGCCATGATACAGCTATTACAACTGTCCCTCccacagcaacagcaaataCCACTTTTATTTCTACTGCTGCCATTACTGCTGATGCCAGGATTGTTGTTTATAAGTTACCGTGGATAAAGGCTCCTgctaggaaaaacaaaatactaaactacataaagaaatattattattattattatttcctgctGCTGCTATAACTATAGCTCTCACAAACAACTTTCTTATTGCTTAGGCTTATAGCtatacatttagttttcttgaaGAACCCATCATTATGGACAGGGGATGTTGTTGGtacatattataattataatttataatcataaaacaaagcCGTACATCTTTCATGAATCTACACAGACATACCTGTGTCCAGTGTACAAAAGACAACCATGATATAAATTACAAAACGCTTGTGAAGCCATTTTATCAAtcttctgaaaaatgtaaagtataaaaataatgtttaaaatcatgACTATGACAGTAGATACAGGGAGTAAGTGacagagttttttttattataacatttcttaaaacaccctatatatataaatagtaacTCTATATATCATCTCTCCCTAATAGTCTGGTATAGAGCAGTacattgtatgcatttaaatattatctGTCAGAATCAACAGCAAATCCTCATCAAGATTGAGATGCGTATTCTTGGAATGACAAGTGGTAAggtgaagtgaagaaaaaaaaatcaatttgctCTGATTCAATGCACATTGAGACCACACTTCAATGataagaaacattttcttgtttaaatcTGCATGAACAGACATTAGAGTCTCTGGCTTATCTTTCTGAAAGTGGCACATTTACAACACAGTGTGGGGGGGAGAAGCATTATGCAATCTCAGAAAAAACCATTGACTTGCCACCCCCTCCCATTTGTACTAATGAGCACTGTGTACTAAGGCTGTCAAACCCTAAGACTTAgtctaattttcatttttaaattgataactACTCCCTCCCAGCCTGCAAATGTTGAAAAGGTTACAGCAACTTGAAGAGGGAGAAATATTCCCTTTCTTAAAGACCGACTGGAATCTGCATTACAGACCAGAGTAGGCCTCGCCTTGCAAACGAGGCCTGCATCAGCACAATAGTTGCTTGCTGACAAGACCCCTGAAGCAAAGTATATGTGATAAGCTGCTATGATGAGGACTGCTTCAGAAAATGATTAACCAAGTCAGGACATCTCCAAGGTCCTTCTGTCTCACCTCAAATCAATATCATGATTGGTTGTAACAGGTTAGACACTCCCAGGTTCAATCAAGTATACCCCGCACCCCCACCATCAATACACCCATGAGGAGTACATGTAGATTTGTCACTCCACGTATGCTATTTCCGTAATGCTTCATGAGTGATATGTGGTCTTCCcttgtatgcatttaataaaatatctggagcaTATAAATCAACCTGAATCGGGTGTCTCTTTGGATAATTTAAGACAAATCTCTTCAAACATCATTAGTTGAATTTTGTAACACAAGAAACATTGAACACCCTGCAAACTGATAAATGAATACTCCATCTAATATCTGTGAATATTACTATCCTATCTATGCATGCTATAAATGCACAGGCATAGTATGAAACCATCTCTGTAGAATTGAAATTAACTGCAAAGTTGgacatattttgtcattttgtgtttattattagcCTATTCTTTACCAGCAGAAGCCACTGGAAACACATCCGCATTGCATTTCACACAACAGGAGCAAAGCACCTTTGTAATTCACTTTTATTCTGCTTCCCAAGATGGAATATATTATgggttacaaaaataaatgagtgaaaCAGAAGTATACTCTGTGTGTTCAGTTGATTtctaattaagaaattaaaccTGTTAATAAGCATAACATATGAGTAAAGCTTTGGAGAATATAATACGAACATAATATCGACACCGATTACTTTCATAAatgacagctgttttttttaattgagtagATCATGTCTTATTACTGAACATGTTATATGTCCAAgaaattatttaacaatatcATACGATTAATAAATTAGACATTTCGGAGTTCAACCAATGTGAActcatgagaaaaaaataaataaatgaacaccaAAGAGGTCaataaatgcagaatatttATGTTTCACCTTACAAGAGCAAAAGCTGCAAACCAACACAAGCATTTCACCAATGATCACTGTCATACATGGCTATGTAGTGCTAATTCAACAAAGAACAGTGCAAAGAAATGCCAGATAGTAATCTATGGCATCCTATATCCTAATGGTTTAATtctatattttcaaacatgaatgccagttttgtatgtttgcagAAAGTAGGAACAGCACACAAAGCTGAAACATTATCCCTGTTTCAAACTGCCACAGTTTGAAGAGCCGAACTGTGTTGTGGttttaccattattttataCAGGCTAAACTGAGACCAGAAAACCGAATCCACATTGTGGCCTGTCCTGATCCTGATCCCCAAATGGCAGCGCTGAAAGTCTAAATAGACTCTACACATTCCCCTAGCAATGACTATTAACACTGGCATGTGATAAACTTACCACAACTTTGTACTTTACTACCTCTAATCAATGCAAGACAATCGACTATGGGACAGATTCATAGAACCCTCATGGCAACGCCTGGTTTTCATAACgagggaggaaaaaacaacaaaaaataactggAGTCTCATACACAacttaataaaattaaacaagaaattaaattattggttttcctattgtttaaaaaagggacattacattaaaagaatttaaagtttaaatatgGTCCTAAGTCTCTTTAAGTACAGTGAGAATGGATCAAGTATTAACATTTCACATTCAGTCCCTAGACATTATATTTTCTTGGTAAGAGAAAGTCCCAACAAACCTGACAAGtaacaaataattaacaaagtgtttacaaagacaaaagcaaatGTTCTCAAAGTGGAAGATCTCAGAATGGAATATCCAGGTTCTTCAGGATTTAACTGGTACTGTACTGCTACAAGAAGGTTCTTTCAGCCATTTCAACTATATAGCTACATTAAACTATTATTAGTTTACTCACAAACTGAAATGTTGCCGAAACAGTGATTTAATACTAAGATTGAAAGGTTCAGGTTAACCAGcaggaatacaaaatgtaccTCACACCTTTCCACATACTGAAGGGATCAGTCTGAATGAATGCCAGGCCGTGTGTTaggttttcaatttgaaatttaataaaacaagtcGAATGACTCCTGTGCAAATTAATCAGTTGAAACGTAAGCAAATCAAAACCAATGAAATATGCCCAGGTGCAGTAATcctaatatttaattaatctgtctgAATAACTGTCAGAGTACATTACCAATATATTTTGTGAGCTGGAAGAACTAAAATGTCCAAGGCTTACACTAGCAATAACTCGTTTAAGatcattgttgttgttcctgctgctgctgctgctgtcggGGGATTAGCCCACCATCCTGTGCGGTGTTGTAGGATCCACAGCTGCTGCACTTCATTCCCAGAACATGGAAAAGCACTGTGCAGTGAGTCTGGCAATCGTTACACATGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU99265 False 1472 lncRNA 0.37 1 23327498 23328969
TU99266 True 4018 lncRNA 0.36 1 23327498 23331515

Neighbor

gene id symbol gene type direction distance location
AMCG00010295 LOC106568140 coding downstream 97501 23213280 ~ 23229997 (-)
AMCG00010296 NA coding downstream 126330 23175774 ~ 23201168 (-)
AMCG00010294 kcnv2,kcnv2a,LOC108428855,LOC107558705,LOC106563439,LOC107726563 coding downstream 158789 23164967 ~ 23168709 (-)
AMCG00010289 NA coding downstream 221532 23104860 ~ 23105966 (-)
AMCG00010285 purp,LOC105909220,LOC107708540,LOC103036944,LOC107703584,LOC108436665,LOC107681187 coding downstream 280057 23044054 ~ 23047441 (-)
AMCG00010303 NA coding upstream 46845 23378360 ~ 23385105 (-)
AMCG00010308 NA coding upstream 67836 23399351 ~ 23416520 (-)
AMCG00010304 LOC107662302 coding upstream 96243 23427758 ~ 23443515 (-)
AMCG00010309 NA coding upstream 180512 23512027 ~ 23549379 (-)
AMCG00010306 NA coding upstream 254046 23585561 ~ 23589652 (-)
G79594 NA non-coding downstream 137 23326988 ~ 23327361 (-)
G79548 NA non-coding downstream 180429 23141385 ~ 23147069 (-)
G79542 NA non-coding downstream 218406 23108853 ~ 23109092 (-)
G79541 NA non-coding downstream 230190 23096602 ~ 23097308 (-)
G79483 NA non-coding downstream 592058 22734995 ~ 22735440 (-)
G79648 NA non-coding upstream 130247 23461762 ~ 23466211 (-)
G79837 NA non-coding upstream 976389 24307904 ~ 24310189 (-)
G79872 NA non-coding upstream 1269617 24601132 ~ 24650632 (-)
G79881 NA non-coding upstream 1392320 24723835 ~ 24759263 (-)
G79882 NA non-coding upstream 1469154 24800669 ~ 24804163 (-)
AMCG00010288 NA other downstream 241153 23082655 ~ 23086345 (-)
AMCG00010271 NA other downstream 1345448 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 1754986 21541019 ~ 21572512 (-)
AMCG00010247 NA other downstream 2245673 21053624 ~ 21081825 (-)
G79147 cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741 other downstream 2386105 20931171 ~ 20941393 (-)
G79601 NA other upstream 28128 23359643 ~ 23364947 (-)
AMCG00010343 hook3 other upstream 2184549 25516064 ~ 25556080 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 3036417 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 3080695 26412210 ~ 26426658 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 6621175 29952690 ~ 29961324 (-)

Expression


Co-expression Network