AMCG00010306


Basic Information

Item Value
gene id AMCG00010306
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23585561 ~ 23589652 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010306
AAAAGCTGCTGGGATATggtctgtgtgtgggtgggtgtatCTTTCGTGACGAACACAATGAAGGTAGGACCTCACAGTCacttttcttcttcagtttgaaagaaagaaaaacaacaacacaaatacaaacaaccaAGCAAAGCCCTGCACTTTCTTTTGCAGTTGCTCCGGATATTACACAGAATCAGTATGGTGGGCTCTGGTTTTGTTGTGGtttgctgttgtgtttctgCCTTGTTCTTTCACTTCTCTGGGTCTGTGTTGGCATTGGGAAGTACCAGACTCTGCGTAGAGAAGGAACGACTGCTGTCTGACGTATCGGAGCCACTGGTCACTCCGAGTGAATGCTTACTGACCTGCACTCTCCAGACGTACTTAAGGATGACACAGAATCGAAAAATGATGACAGTGCGTTTTTACCACACAGTAGCAAGTGAAGTGGGAAAACATTGTTGGCCGCTGCAGCTGAACTGTCTTAAAGGAGAGCGCCTGCAGAGGGTCTTTGTGGTGCTCCCTCTGGACACGAGCACAGTGGGGTCAGATGAATCTGTTGGACTAAAGCCCAGTTTCCCCAAGTTGCAGGATCAGGTGATGCCCCACCGTGGCCAGACAACCCTCAGTGAAGACTGTGGACTACGTTTCGACATTACAGAAGAATTCAAAGCCTCGGAGAATAGCAACATATTTTGCGTGGACATTTTGCCACAACACAGCCGGAAGCTGAAATGTGCGCCATTCCTGGCCACCACGTGGCTAAGGCAGCGCCAACCTCGAAGTTAGCTGGATTGGAATAGAAACGCTTTCTGGACTTGTGTACGcacaatatgaaatgtattaaagtaaTCAAATGCTTATAGAGCtttcatattactttaaataacaatgtgtgtttaataaatagCCTACATATTGTTAGTCATTTACTGATGTCTACATAATTGAATGACAATACTAAACCTATAGTTGCAATTTCCTAGATTGGAAatccataatatatttttcaaatatgacattttaaaaattgattaattttggTTTTCTGGTTTCATAGCGTGGACcttgtttatatatagttaGGAAATGAACAAAAGCAAGTTGTAATAAGTGTAGTCCAGGAAAAATATTCTATTACCCATGAAGGGCCAATAAGATAGTAAAGCTTCTTGGATGATTTCACTGctctatcaattaattaatgcaaacacAACTGATTTCTAAATATTACTGTGCAtaatgtagttttctttttttggtggaTGGGGGTGGGGTCTAagtttgcatacatttttactttgtttaaattagaaaaattgTAATTCcagtttaaagtttttaaaaacaatagaatGATCATATTTATATCTACCTTTAATATTCCTCTAGCTTTGTTGGAAAATATGCTAGGCATATCTGGTACTGTTCTTATTTGgtttaattcttattttagGCAGAGAAagcactgtttgtgtgtgtgtgtgtgttcaggtcAACTGCTAGGATGGTTTCTTCTGGTGTCCCTCTggatattgtacatttttctaaatCGTAGTGTATTATTTAAGAGTTATGCTGACTACTCCCAGATGTATTTGCAAACCACAGCTTATATTTATTTGGCCATTTCTGCATTCACAAATTGTATTACTGATGTTAAACTTTTCTTGCAACACATGATGTCATATTATTGGGCATGTCGCACTAATTGCTGAAACATAACTACTGATGGGGCACTAACCAAGTTTTGTTATTAAAGTGTGGGTgtcatttttaacagttttgtaacCTTTGAGTCACATATTTTAGAGTATGCATCAAGCTGTCTTTCTCATCTTAGAAACATAGCTCTGTTGGGCCACATCTTGTCAATAGTGGCTGTAGAAAAATACATCCATGCTTTGGTCTCTTCCAGGCTTGCATATTGCAATCCTTCTAGAAGATTCCTTCTAAAACACTTTGACATTCTTTCAAAGCTCTGGTGCTAGGCTGTTGACTCAGTCTTGTTCTGATTAACTTTATACCTGTTGCTTGTCAAATATTGAATTCATGATAAAGTATTGTTGTAGACTATATAGGATATTATggcaattatatattatatacatttatatgccTGCTTGTGCCTTACTGTCCTCTGATGTTCACTAGTTCCTTTAAGTAAACTGTGAAGAGTGGGTGATAAGAATTGATATGGAACCAGTGCTGGATTTAGGCACAAACTAAGTAAGCTACAGTTTAGGCCCTTACATTATGAGAGGCTTCTAAATAtgaacaatacacaatatttcttgttttatataAGTGGTTGAGAAAATGAGTCAGGGAAGTGGGGGTAAGACTctaaatttattttcttgtaatatgATTAGTCAATATATATTGACTAATATATGTCTACAAAGGAATGCCATATTGAGTTTATTAATCTGTGTAGATTCCACACAGATtgttatttctgcatttaatatGCACTGCAGAATTAACCATAATTCATTGcccaatcaaataaaatgttgtaagattaaaaacaaacattattatgtatttgggTATACATAAATGCTGATGAAGCTGACATTCGAAACATGTTTGCTCTAGTTGGCCGcaatatgtttttgaatatattaaatgctttttttttttttttttttttttaataatgtttttgagTGTGGACCCTATTcctacatttaatatataattagtttggtctatgcactgtattatactatactTTCTTTTCTAAGCGTGGGGTCTCTTTTCTTTCTATGTATTTGGGTAAAAATAATAGAGATGTATTTaccttaaatattttgttttgtatgttcttGTATATTTGCTATGATATTACGATGGTTTTGCTGGTGTAataaacttttgttttcctga

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010306 True 2886 mRNA 0.36 2 23585561 23589652

Neighbor

gene id symbol gene type direction distance location
AMCG00010309 NA coding downstream 36182 23512027 ~ 23549379 (-)
AMCG00010304 LOC107662302 coding downstream 142046 23427758 ~ 23443515 (-)
AMCG00010308 NA coding downstream 169041 23399351 ~ 23416520 (-)
AMCG00010303 NA coding downstream 200456 23378360 ~ 23385105 (-)
AMCG00010295 LOC106568140 coding downstream 355564 23213280 ~ 23229997 (-)
AMCG00010307 NA coding upstream 1372 23591024 ~ 23597743 (-)
AMCG00010302 nup54 coding upstream 38999 23628651 ~ 23642630 (-)
AMCG00010305 NA coding upstream 57739 23647391 ~ 23666530 (-)
AMCG00010312 NA coding upstream 124385 23714037 ~ 23722905 (-)
AMCG00010311 NA coding upstream 144370 23734022 ~ 23761096 (-)
G79648 NA non-coding downstream 119350 23461762 ~ 23466211 (-)
G79595 NA non-coding downstream 254046 23327498 ~ 23331515 (-)
G79594 NA non-coding downstream 258200 23326988 ~ 23327361 (-)
G79548 NA non-coding downstream 438492 23141385 ~ 23147069 (-)
G79542 NA non-coding downstream 476469 23108853 ~ 23109092 (-)
G79837 NA non-coding upstream 718252 24307904 ~ 24310189 (-)
G79872 NA non-coding upstream 1011480 24601132 ~ 24650632 (-)
G79881 NA non-coding upstream 1134183 24723835 ~ 24759263 (-)
G79882 NA non-coding upstream 1211017 24800669 ~ 24804163 (-)
G79963 NA non-coding upstream 2134825 25724477 ~ 25724677 (-)
G79601 NA other downstream 220614 23359643 ~ 23364947 (-)
AMCG00010288 NA other downstream 499216 23082655 ~ 23086345 (-)
AMCG00010271 NA other downstream 1603511 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 2013049 21541019 ~ 21572512 (-)
AMCG00010247 NA other downstream 2503736 21053624 ~ 21081825 (-)
AMCG00010343 hook3 other upstream 1926412 25516064 ~ 25556080 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 2778280 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 2822558 26412210 ~ 26426658 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 6363038 29952690 ~ 29961324 (-)
AMCG00010458 LOC107396140 other upstream 6921318 30510970 ~ 30520381 (-)

Expression


Co-expression Network