AMCG00010295 (LOC106568140)


Basic Information

Item Value
gene id AMCG00010295
gene name LOC106568140
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 23213280 ~ 23229997 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010295
AGAAACATGGCCTGTTCAGAGGTATCCTGGCCCATTCCCATGAAAGCCATTGGGGCACAAAATCTACTGACAATGCCTGGAGGGGTCACACAGTCTGGTTATCTCCACAAGAAGGGAGGCACACAGATCAACCTCTTGAAATGGCCCTTGCGGTTTGTCATCATTCACAAAGGCTGCGTTTACTACTTTAAGACGAGTACCTCTGCAGCTCCACAAGGTGCCTTCTCTCTGAACGGGTACAACAGGATTATGAGAGCTGCTGAAGAGACGACTTCTAGCAatgtgtttcctttcaaaattgTTCACTTCAGCAAGAAACACCGCACGTGGTACTTTTCAGCTGCCTCAGAGGAGGAGCGGAAGAAATGGATGCTTTGTTTGAGGAAAGAAATTGACTATTACcatgaaaaaagggaaatacatGTTCCAAGTGACTCTGATTCTGATGCGGACAGCTTTTACGGTTCTATCGAACGCCCTGTTGATATCAAATATTCCCCAGAGGCAACAGATAATGATGAGTACACAATTgaggatgaagatgatgatgatgaggaagACTATTTAAAGCCCGATGGGTCACCAACTTCTCCAGgcCAGCCTACTGTACCTCCACCTGCctatcctcctcctcctgtcccATACCATAAGCCACAGTCCCGGCAAGAAAGTGTATCATCTCTACAAGTCAGAGCACAGCCACCTCTACTGTTACCACCAGTTCCCACTAAAGTTCTGCCGAAGCCTGTTCTTCAAAAGAAAGCCCCTCCACCTAGCCCACCACCAAAGAGATTTGAAAGCGACAAGGTCTCCACCCAGGGCCACAGCAAGCTCCCTCCCCCGCCTTTGCCTTTTGCTCCTCACTTACCCCCGCCCCCCAAAGGCCCCAAACCCCAAATGATACCTAAGCCTCCATCCCCTGCTTGTATCGACAAAACTTTGGCCTCCAAACAGATGTCAGCCACTATGCCTGTTTGCCCTAGCTCTGAAAAGAAACCGCCCATCGGTGTTGGACAGTTCTCAGCGACTTTGCCCATTTGCAGTGACCTCCAGGCAAAGCTTGCCCTGCGGTCTGCCAATAAGCCTAATATACCCATTCACAAATACAACATCCAGCCTCCAGAAAGTGAGACCCAAGGATCACTAACTACTCAGAAACCTGGGCTATACAAGCCGCCAATTGTTCCGAAGCCTCCTGCCCCATCCACCAAGTTAAAACCCAAATGTCCTGGACAGTCCATTCAaaGGTCATCACCCGAAGGACAAAGTTTCCGATCATCAGTGGATGAGGCCCCAACCCACCTGCGGAAACTATCCCAAGCGAAAGAGGAAGACTCTGATGAAGACTATGAAAATGTACAGCTGCCAGATTCAGTGTTTATCAATTCAAAGGAAACGAGCGATGCTGAAAAACTatttaaagatacaaataaaggTGGCTCTCCTCAAGATGGTCTTTACTGTATTAGGAATTCAGGAACAAAGACAACAAAGGTCCTAGTTGTGTGGGATGCAGGTTTAGACAAAGCCAGGAACTACAGAATTTTCCAAGAAACTTTAGgaCTCCAGATTCTATCTCGAAACCTATTTGACATTTCCCTCATTGGCAGCTTTGGTCGAGCACTACTACCTCCACCCCCTTCCAAACCACAACACACTGGTTCTGCAAAAGCCATTTGGCTATACTCCACCGAGGTGATCGTGCTGCTTTTGGATGCTGGCTGACAATCAAGCTTCATGTTTGCACAGAACTAAAGGTGCCCTACATGTGAGCAATCTCTTAGGTCCAAAAAGGAGAAAATTGGCATTTTGTAACAATGCCAATACTCTTCATGGGAAGGCGTCACTTGCTTTTTGGCATCGAGATACAGACGGTGTTTGAACAAGTTGATTGCCCAATACTCGGCTGTCCCCACAGACATTGCACAGCCCAGATCATAACTTCTTCTTATTTACTttataagaaaaacaatgttttttatcTGACTTTTATAATGTTATGAAGGGGTTATAACATGGGCAGTTCTACTCAGAATCATCAAGTTGTTTCTTTCACAGCTGTGTTGGCTGTTTTCACTTCATCTAACAGATGTCAAATCATGTATCACTTTTCGAACCTTTATGGTTCCTGTGAATGGATCTGTTGTATATGTAACATAGTCCCCTCAGAACTGAGAACCAAAATATGTTTGATAATGCACAGCAAAAATGAacattcaaagtattttttaatatacagaaatgtagttaatttaaattcatttcaGCTGCCTTGGATCTTCATGTCATTTGTGGATTTCCCAATGCTAGGGATAAAAACAAATGGGATAAAACGCTTTACTACACACTTTGCCCTGTGCCTAGTACGCACACACtcaagtgtctgtgtgtgggaaATGCAAACTGTGCAATTGCAATTGGGTAGACCATACGTACAGTAAGGTGGTGCATTATAGTGAAGTatagtagtatagtatagtagtaTAGGGCCCGAAAGTTAATCTTTACACAGCGCCCACAAGTGGTAAACCCCAGTACTGATTACGATGACTGAAACCAGTCTTCTTCAATTGGCATCACGCCATGATTGAGACCAGgtttctcaatcctggtccttgGGACTGTTTTGATCCCAACTCAGCTCTCGAAGACTCTGTTGCACCCATTGTTTAACTAATAAGTTACTTAGTTAAACCCAATGAACTCATTTAATTTTCTCCTGACAAGTTGCTGACCCCAAGTAGTCTCAGATCACCTACCATTTCTGAGCtggaaaaacattcaaacagtgtaattaaacaaataagtagtTCATCCAAGGGTTTGTATTACCTGACTAGGAACTCAAGTGCAATTGAAGCCAGGAGACAATAGTATACCCAGCATGAGAACTGGGAAACACTTGCTCAGGCTGTGAAAAATGCAGCTTGCAAGAGAGTGTAATCTCCATTATCTTCTATTGACAAAGATTCTGGCCATTACTAAAGCACTGGGAAAAGACTGACGTAAACACACTAACTATGTGAAGGTATTCTCCACAATGTCTCCAAGAGGAATCTTCACATATAAAAGTATATGCAGGAGAGAATAGATTAGGAAGTGTGAAATGGATAGGTGTATCATGCAATGCTGCATGAAGATTTATACAGCATCTGTTATTATTGTCATAAGTTgctatattgtatatatttttatattatttgaactTTGAGCTGTTGACAGGATTTCAGAGGTTTTCCTTTGTACCAAGCTGAAGCTGTTGACAGGATATTAATCATGATTCCTGTTTAGGACTGTTGAGAATATTGTATCAAAACAGAAGAAGGAAATGTGGTTGACTGAAATTGTTTGTGGGCGCtatatgtatttccttttaaacCATAGACTGAGATATTGACAATCTGTAGCCCTGCTTACTGTGAGCACAGTCACAATGTAgaatttgttgttttatcacAAGGTACACttaaaacttaattttttttgctaTAACTTACACCGAATATGTTTACTGTTTCATagactacaaaataaaaaaataaaaatctgaaaccCCACAAATCTCTAATATCTGTGGTAGTGGATGACATAGTATACTGCTTTGCATCAAGCTCAGTAATATAATTATGGTATGAAAACAATCTTACAGCAATTTCATACTGATGtaccagaaaaaagaaaaatatgtggAAAGGGTTAAAATGGAATTACATGAATGAATGATTGCAATACCTTGTGTCTCCCATTCAAGAGGAAATTGTGAAAAAACTGGTATTAAGACAAGAGActatgctttatttgtttttttaatgtataaatgcagTGTCTTCTAGGGAAAGATAAcacacttttttatattttattccatcACAAATCCTAATTTATTTGCTTGCCTATAGTAGGGTAAATTAAGGGAATCGTGTATTGGTTTGATTCGAATCCAGGACTGAAATGTAATGGGAGTACCAAGGTTGCCTAGCCCTGTGATTCCCACTCCTGGTCTTGGGGCATACAATGTTTATTCAAGTCCACAGTGGTATATATATGGgtaaaaccaaataatacaGAATTACTATGTAAAATTATTGGGGTAAACTTTCATAAGAAAGGCTCTGAGTTTTTCTTTGCTTGAGTATGGTTCTCCCAGAAACTGATTACAAAAGTAAGACCAGGAATGGTGCTAATGAAAGTAATACTTTTGTTATCTGATACCttctatatatgtttttcattgcGAGTCCAGTGTATTTTGTTATGGTCAAAATTATTAAGTATTATAAGTAAGTATTACACCCATGACAgaaatattgtgttatttattgtattgtgataCCTACAgagtaatgtaaataaaatcatatttgtatttccagAGTGTACagatttgttatattttgtaaagaatttatataaaat

Function

NR:

description
PREDICTED: SH3 domain-binding protein 2-like isoform X3

GO: NA

KEGG:

id description
K07984 SH3BP2; SH3-domain binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010295 True 4416 mRNA 0.40 13 23213280 23229997

Neighbor

gene id symbol gene type direction distance location
AMCG00010296 NA coding downstream 12112 23175774 ~ 23201168 (-)
AMCG00010294 kcnv2,kcnv2a,LOC108428855,LOC107558705,LOC106563439,LOC107726563 coding downstream 44571 23164967 ~ 23168709 (-)
AMCG00010289 NA coding downstream 107314 23104860 ~ 23105966 (-)
AMCG00010285 purp,LOC105909220,LOC107708540,LOC103036944,LOC107703584,LOC108436665,LOC107681187 coding downstream 165839 23044054 ~ 23047441 (-)
AMCG00010284 NA coding downstream 207834 23003015 ~ 23005446 (-)
AMCG00010303 NA coding upstream 148363 23378360 ~ 23385105 (-)
AMCG00010308 NA coding upstream 169354 23399351 ~ 23416520 (-)
AMCG00010304 LOC107662302 coding upstream 197761 23427758 ~ 23443515 (-)
AMCG00010309 NA coding upstream 282030 23512027 ~ 23549379 (-)
AMCG00010306 NA coding upstream 355564 23585561 ~ 23589652 (-)
G79548 NA non-coding downstream 66211 23141385 ~ 23147069 (-)
G79542 NA non-coding downstream 104188 23108853 ~ 23109092 (-)
G79541 NA non-coding downstream 115972 23096602 ~ 23097308 (-)
G79483 NA non-coding downstream 477840 22734995 ~ 22735440 (-)
G79466 NA non-coding downstream 518321 22681665 ~ 22694959 (-)
G79594 NA non-coding upstream 96991 23326988 ~ 23327361 (-)
G79595 NA non-coding upstream 97501 23327498 ~ 23331515 (-)
G79648 NA non-coding upstream 231765 23461762 ~ 23466211 (-)
G79837 NA non-coding upstream 1077907 24307904 ~ 24310189 (-)
G79872 NA non-coding upstream 1371135 24601132 ~ 24650632 (-)
AMCG00010288 NA other downstream 126935 23082655 ~ 23086345 (-)
AMCG00010271 NA other downstream 1231230 21964529 ~ 21982050 (-)
AMCG00010262 shc3 other downstream 1640768 21541019 ~ 21572512 (-)
AMCG00010247 NA other downstream 2131455 21053624 ~ 21081825 (-)
G79147 cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741 other downstream 2271887 20931171 ~ 20941393 (-)
G79601 NA other upstream 129646 23359643 ~ 23364947 (-)
AMCG00010343 hook3 other upstream 2286067 25516064 ~ 25556080 (-)
AMCG00010364 inip,LOC107658659,LOC107558675,LOC107571239 other upstream 3137935 26367932 ~ 26379747 (-)
AMCG00010371 NA other upstream 3182213 26412210 ~ 26426658 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other upstream 6722693 29952690 ~ 29961324 (-)

Expression


Co-expression Network