RNA id: TU98065


Basic Information

Item Value
RNA id TU98065
length 1621
RNA type TUCP
GC content 0.38
exon number 4
gene id AMCG00010188
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17840707 ~ 17844389 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGATGCCATCTCTCAGCAGACAGCAGTGCACTGGAGCTTCAGCAAGGCTTGGAGATTGTAAAGAGTCCAGCAGCAAGAgctttctctctccatccttGTCAAGAAGATAACAGCTGATACCACCATGGCTTCCAGCATCACATCTGTCTGCATCTCCACATTCCTCATCTTCTGCTGCTTCAGAGCTGCTCAAGGAGACATCAACATGGCAAAAGACTGTTGCCTGAGGGTCAGTGACAAGCCCATCCCCCTCCACGTGGTGAGAACCTACATGAGTCAAAAAGTTGGTGACGGCTGTGACATTAGTGCAATCATcTTCATTACCAAGGGTGAACTGAGACTGTGTGCCCCAACTGGACTAGCCTGGGTGAAGGATCTGAAGATCAAGGTGGACTCGAGATGGGCCATGTGCAGGACCAAGAACTTCAAGcCTAAAAGGTGCCATAGCCTGAGGCGGGGAAAGTAGAAAGCTTGAAGAGAGACCTTCATAAACTCACAGAAGGTCACTGGATTTGGGAGGGGAACAAATGACcattaaaatgtgatattacaaaaacaaatgcactatATATATTGAACAAAAGTTGTCAATGCTGTTATGGAAAGTAGAGGACGTAAAACTTGTGATTTTCCAGTTTACTGTTCGGCATTCAATATTCCAGAAGGGAGAGTgggattcatttttttaaaacaataataatcatcaagTGGTGATGCATTTTATTGCAGTCAGTCTCAACTGATAGTTGTTGTTTCCAGGACCAAGTTAactgaggggggtggggggttgggaccgggtttaatgttttatgactgTATATTAGCCTGCAAAGCACAAATCAGATTCATTGTGAATTATTCCTACTTTTCTATCTATTcattatttcacacatttacagCATGAGTAGTACAATTTCCAAACACTTTAAAACTATGCCAGCAATGGACAAATGTGCATCTAGTAATAAACAGGATGTGCGAACAGGCCAGAATGAAGTAATTAGGTGAATTTCCCATCGAGAAGTAGGAATTTAAGGCACACTCCATGTAATAGCATGGAGTACCATACAGAAGTTATGATAAGCTTTTAAAATTCTCCTTTGACCATATATGTGATAATTGAATACGTGTTGAGTGaaaggattttattattttcagaagcaatgCATTTACAATTAGTTCAGGAAAGGGGAAAAGTAAGGCatgaatttaattaactgaagtttaattgaaccactgaattttcttttttaaacatttataaatattaatcagcactgtattaatttcatatacatacaaaaatgcatGGTTTTCGTGTTTTATGACTTAAGCAGTAAACATATTTTAGTATCAACATTGTTTCTTCAGCTGTCCTTTATTTTAGTTAGCAAACACAAATATTGATAATTGATGTGAATTCACACTGTGAAGGACTAAAATAAGCAAAAGATCAGGTGTCAGATGTGTAAAGTCTCtcataaaatacagtttaacacACTGCCTATGACTATTACTAATGGAGaaagtcaaaacaaaaccaaacaaaacttGTTCTTCTTTTAAAATAGCATTTTGGAAGGTAGGACACATTAATCAAGGCTCCACAGAGAAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98061 lncRNA downstream 19820 17817560 ~ 17821172 (-) True G78600
TU97957 lncRNA downstream 366861 17473829 ~ 17474131 (-) False AMCG00010183
TU97949 lncRNA downstream 376429 17464226 ~ 17464563 (-) True G78511
TU97948 lncRNA downstream 376974 17463477 ~ 17464018 (-) True G78510
TU97947 lncRNA downstream 380488 17458889 ~ 17460504 (-) True G78509
TU98071 lncRNA upstream 91733 17936122 ~ 17936577 (-) True G78609
TU98076 lncRNA upstream 124780 17969169 ~ 17969368 (-) True G78614
TU98077 lncRNA upstream 125251 17969640 ~ 17969841 (-) True G78615
TU98078 lncRNA upstream 129114 17973503 ~ 17976065 (-) True G78616
TU98132 lncRNA upstream 333188 18177577 ~ 18183301 (-) True G78661
AMCG00010189 mRNA downstream 15500 17822669 ~ 17825492 (-) True AMCG00010189
AMCG00010181 mRNA downstream 347204 17483505 ~ 17493788 (-) True AMCG00010181
AMCG00010183 mRNA downstream 362201 17473856 ~ 17478791 (-) True AMCG00010183
AMCG00010182 mRNA downstream 367384 17465112 ~ 17473608 (-) True AMCG00010182
AMCG00010180 mRNA downstream 388504 17440183 ~ 17452488 (-) True AMCG00010180
AMCG00010190 mRNA upstream 8504 17852893 ~ 17855821 (-) True AMCG00010190
AMCG00010195 mRNA upstream 230543 18074932 ~ 18111982 (-) True AMCG00010195
AMCG00010196 mRNA upstream 271125 18115514 ~ 18126029 (-) True AMCG00010196
AMCG00010205 mRNA upstream 980016 18824405 ~ 18850929 (-) True AMCG00010205
AMCG00010206 mRNA upstream 1021734 18866123 ~ 18872082 (-) True AMCG00010206
TU96773 other downstream 6111827 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 10778171 7057805 ~ 7062821 (-) True G76762
TU95819 other downstream 10903924 6936718 ~ 6937068 (-) True G76752
TU95738 other downstream 11172158 6666606 ~ 6668834 (-) False G76684
TU95471 other downstream 11940008 5894675 ~ 5900984 (-) True G76463
TU98067 other upstream 8478 17852867 ~ 17855730 (-) False AMCG00010190
TU98072 other upstream 100846 17945235 ~ 17945761 (-) True G78610
TU98705 other upstream 3086782 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 3231552 21075941 ~ 21081825 (-) False AMCG00010247
TU98958 other upstream 4120140 21964529 ~ 21981974 (-) True AMCG00010271

Expression Profile