RNA id: TU98078


Basic Information

Item Value
RNA id TU98078
length 2563
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G78616
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17973503 ~ 17976065 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagacatTAGTTTGTATGAATCTGCAggtttgtgtattattttttgtaaaggcTGCTGTACCCTGAACATTAATTATTTCAGGTTGTATGAatactaaatcaaataaatgtgatataaatatatcactAGGCCTCATAATCTGCAATCCCAAAACCATTGACAAAGTGGTGAAGTACTACTTGTCATTGTATGAtgatacttacattttcttgtttctctttgaattaaaataatgcactttACACCACCAATGGGTATAGGTTATCTTTAAGTACTGAAACAGGAAAAGTCAAACattctctcttgctctttctcCCATGCTTTCAGAGACAACGTATGTACTTAGATAAAAATGAAGGGGGGGACCAattcctaatatatatatacaatctgTGATATAAACTATTTCATTAGCACAACCACACAACCATACTCACAGTGTTATGGCATTTCAGAGGTCTATTCTACATTCTTCAGAgttatttcccttttaaaatcAGCAAAAGGTCTATGTCTTCCGTTTCTCACTCATTAGCATCAGAATCAACAAAATGGAAGATCGTCTGTAGTTACAGAGCACTTATTTATAATGAGCGTTAATCGCATTGAATTCAGAATGCACCAGCTGTAATCATCTTTgacttttaattaacttttatccaagctgctgctggttgcctttcaaaacaaaactcgGTAACTTGGACGTCCTCCTTTTTAGATCTGTATCTCATTAGACTACAAGGTTCCCTTTTCCCCTCgtcttttaaaacatacttaTCCTGACAGATTAGATTAAAACTGTATGCACCTTGGACTCACTATGCTTCTCTTTTTACATTCTCTTGAGGATACTTTGTGCCACTTGTAATGCAGCTGGGAGTGTTTGTAAAGCACTGTGTTACACCAGCTAAAACGGGATCATTATGGAGTTCTTGTCACCACTCTTTGATATGGCTCTGTCCTCTGGAAGGCTGTTAAGTAAATGAAGATcgtatttcattttgaatggcTTAAAGCGGACGGTGTCCTCGCATTGACTGAGGGATTTTATTGTGGAAGCTGAGTCTTGCATTTGCATGTGTAACTGACTTTCACCTCCACATGCAGCCTTCTCTGTCTGCTATCATTGCCACCAGATGGTTATGAGAAAAATCACAGGGAACCAATAGTTAATCTTCTTTATAACGGAAAGCAATAGGTCTAATTACACTTTCACAAACTCAGATCCCAAAAATAGCCACCACGTTCGCTCTGTGGAGCTTACTCCCTGTACACTAATGAAGGTGAGGGGTCTCTTAATTCTTTATTCAAACTTGCACTTTCCCAGAGTGCAGTGCTATCCAGGCAAACCGTTTTGAACAGTGTATCTTTTGTAGTAGCTGAGGGAATGCGAGGCATTTGAAAATGAGGCTTTACTTCCAGTACAGTTGTGGGAGCAGCTGTCCAGCTCACAATGCTTATAGTACTTTTCACGCCCTCGAAATCTCTGTAGCAAAATGagagaaacacaagaaacacCACAGGCCTTGTCTACGGCTCACATACatagaaataatttaaaaaggtgaAGCTAAATCATAggtttcatgtgtttattttaagccTAATCCATAACTTTCAGTGCATTATCTATTTGTTGCATTGTTCTGCCTTTCCCCGCATTCAGAAATCCCTCACATTCAGTTTCCTTGGTTAAAAGAAGCtggatttaaatgcataatctTAAACAAAAAGGCAAAGACAACTAAGCAAGTTTTATGAGGATTCTTGGGATACTTGGTATTCAAGTTGCTCAGACATGTCTCCAGTATTGGTCTTGAGAGTTAGAAGGTGAGAAtactttttcattcattttcttttttcttacaAAGTCACTCAGttatttttacagttgtttggtactattaaacatttacaattttagGGGAAAGTGCCAAGGCAAGGTAATATATAGGTTAGTAGGTTATTAACATAGCTAATTTAACTGTGTTCATCAGTATGTGAAGTCTTTATCACATTTGATTCTTAAATATGTGTTCGCTCTTTCTGACCTAGAGTGAGTGAAAATGACAAGCAACTGTGCTGCCCTTACTTGAGGATAAGgagaataaatatacattatatatatatatatatatatatttcgtAAATAGCTTTGATTCCTGTTTTTGTACCTGTGCTGGTCCCAGCTGGCACACTTTGATTTTATAAGGATCGATAAGTTCTCAATATGAAGTCAGCAGTGTATCCATGACGTCCCCTCTTTTGCTGTGGAAGAAATCCCTGCACAGGTTGTCTTCCTCCCTTCGGTGGTTTTGCCAATTTTTTCTGAACTCCCCTCCCAAGGACTTGGACCGCTCCACAGGGTTATAGAGGGGGGCGGAGGTGAATGGCAGTGCTGTTTGGGCGTGCTGCCAGGATATAGATAGCACTCTCCTTCAGAAACTCCTGCCAGCTCACTTGTCTGCCAGACAGAAAAATATCAGCAGTTAAAAGAGTTCATCAGATTTTTCGTatcattcatccatccattacATGGTCACTGTGAGCCATAGCCTG

Function

GO:

id name namespace
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98077 lncRNA downstream 3662 17969640 ~ 17969841 (-) True G78615
TU98076 lncRNA downstream 4135 17969169 ~ 17969368 (-) True G78614
TU98071 lncRNA downstream 36926 17936122 ~ 17936577 (-) True G78609
TU98061 lncRNA downstream 152331 17817560 ~ 17821172 (-) True G78600
TU97957 lncRNA downstream 499372 17473829 ~ 17474131 (-) False AMCG00010183
TU98132 lncRNA upstream 201512 18177577 ~ 18183301 (-) True G78661
TU98198 lncRNA upstream 887203 18863268 ~ 18866487 (-) False AMCG00010206
TU98246 lncRNA upstream 995298 18971363 ~ 18971627 (-) True G78761
TU98252 lncRNA upstream 1018108 18994173 ~ 18994596 (-) True G78767
TU98261 lncRNA upstream 1030151 19006216 ~ 19010234 (-) True G78773
AMCG00010190 mRNA downstream 117682 17852893 ~ 17855821 (-) True AMCG00010190
AMCG00010188 mRNA downstream 129234 17840707 ~ 17844269 (-) True AMCG00010188
AMCG00010189 mRNA downstream 148011 17822669 ~ 17825492 (-) True AMCG00010189
AMCG00010181 mRNA downstream 479715 17483505 ~ 17493788 (-) True AMCG00010181
AMCG00010183 mRNA downstream 494712 17473856 ~ 17478791 (-) True AMCG00010183
AMCG00010195 mRNA upstream 98867 18074932 ~ 18111982 (-) True AMCG00010195
AMCG00010196 mRNA upstream 139449 18115514 ~ 18126029 (-) True AMCG00010196
AMCG00010205 mRNA upstream 848340 18824405 ~ 18850929 (-) True AMCG00010205
AMCG00010206 mRNA upstream 890058 18866123 ~ 18872082 (-) True AMCG00010206
AMCG00010209 mRNA upstream 907345 18883410 ~ 18903519 (-) True AMCG00010209
TU98072 other downstream 27742 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 117773 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 129114 17840992 ~ 17844389 (-) False AMCG00010188
TU96773 other downstream 6244338 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 10910682 7057805 ~ 7062821 (-) True G76762
TU98705 other upstream 2955106 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 3099876 21075941 ~ 21081825 (-) False AMCG00010247
TU98958 other upstream 3988464 21964529 ~ 21981974 (-) True AMCG00010271
TU99198 other upstream 5106781 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 5383578 23359643 ~ 23364947 (-) True G79601

Expression Profile