RNA id: AMCG00010264


Basic Information

Item Value
RNA id AMCG00010264
length 2689
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00010264
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21661590 ~ 21681366 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAAACCTAACTGTTCCTAAGATCCCAGAGTCAAACATGGCCCTGAGTATTCTTGGCGTATTCTTGGGGTTACTTCTTGAAGTGTCAACGCATGGGCCGACTGGTATACCCAGGACGTCTTGGAAACATCAAgATAAACAGGTGCTATATGTTGGTGCAAGGGAAGCCATTTTTGAGCTAAACATGGGAAATATTTCAGTCAAGAATAATAAGgtGATTTGGAAAGTTTCCGAAACCGAGATGGAaaggtgtattttaaaaggaaaatctaAAGAGACAGAATGCCTTAACTACATTAGAGTTTTGCAAGTTCTCGATGGTGACAGTCTCTACGTCTGTGGCACACATGCGTTTCAACCCTCCTGTGATTACCTGTCTCTCAAAGAATTTAAACTGGAGAACAAACCTGAAGATGGCAGAGGGAAATGCTCATTTGATCCAGCCCAGAGTTTCACAACGGTTATGGTTGatggAGAACTTTATTCTGGGACTGCCTACAATTTCTTGGGCAGTGAACCGATTATTTATAGAAATTCGCTCTCTCAAAGCTTATTGCGAACAGAATATTCCACGTCCTGGTTGAATGAgcccagttttgtttttgcggATGTCATCAGAGAAAGTGAAAACAGCTTAGAAGGTGAGGATGACAAGATCTACTTCTTCTTCACTGAAGTGTCTGTGGAATATGAGTTCTTCGGCAAGCTCCTAATTCCCAGAATAGCCCGGGTCTGCAAGgGTGATTTAGGAGGGCAAAGAACTTTGCAAAAGAAATGGACATCCTTTCTCAAGGCCAAACTAGTCTGCTCCATGCCAGAACTGAACTTTGTCTTCAATGTTGTTCATGATGTTTTCATCCTAAAAACACCCGACTGGAAGGAGACTTGTATAAATAACAATGACCGGCTGCAGCATATAAACAGCTCTCTACACTTGCCTGACAAAACTCTTCAGTTCGTTAGAGATCACCCACTCTTGGAAGACCCTGTGCTGCCAATAGGAAATGGGCCAAAGCTTGTTACCAAGGATGTCAACTACACCCAGATAGCCGTGGACAGAGTACAGGCCCTTGACAAGAATGTTTATGATGTTATATTCACAGGAACTGATAAAGGAATTTTGcacaaatcaataatttatGAGGGGGAATACTTGTATGCTGGTTCTGATGCTGGAGTGATTCAGTCCCCCACTGCATTCTGTGAAAAGTATTCGTCATGTGAGGACTGCATTTTAGCCCGTGACCCATATTGTGCTTGGGATTCGGATGTCAGTTCATGCGTGAACATATTGCAAGATCATGTTAGCCATCGAAGgaaCCTGATACAGAACTTAAATGGAGATGCACATCAATGTCCCTCAGtaaaatctctctctcttgaaaACTATCAGCCAATCACAGTCAAGCCTGGAAGTTCTGCTGAGCTCCCATGCCAGTTAACCTCCAATTTGGCTCACCCTGTCTGGAAGCTCAATGCCACAGTGCTGTCGACCGAAGCCACCAAGTTTCACTTGATCGGTGACACAGGCATGCTCATTTACAGTATCTCTCCAGAGGACCTGGGTGTCTATGAGTGCTGGGCGGAAGAGCAGGCGAAAGGCAAGAATTTTACCCAGCTGATGAGCGGCTACATCTTAAGTTTTGACTTGGGGGAGCGGTATACAACGCTGGGGCCCTTGACTTCCACTCTCACATCCGGTTCGGCCCTCAAGCCAGCAACAGAAGGTAATAGTAACACAGCAGGGCCCCCACTAACTTCAACCCTGCCAAGCTCTCCCACCCTTCCACCCCAAACTGAAACAACACTAACCCCGTTATTGAGCACAACGGTAACACCATTGCAGATGCTTTCTTTCCCCAGTTCAGGCTCTCCTATCCTCGAGACTCGGGACCCTTCCACAGAGTACCTGAAGACAGACAATGGCAATgccctcctctttctctttctgctttTCTTCCTACTTTTCCTGGCATTGATCACGTACAACTGTTACATGCAGTACCTGCCAGCCCCCTGCCTCAAAGTGCGTGCAGCACTCTTGGGGAACAAGAAGAAACCCCAGCCTGATTACATGACGTGTGAAGCTGGTTTGATGGAGCCGATTGTGGAGAAGGTGGAGCAGACTGATGCCCACAGCCAGAACCAGGGCCAGCAGAAAGCTCTGCGGGACACAGGGTATGAGACGGAACCAGAGTGCGGGAATGGCAAAATCCCCACTCTCGAAGACTTGGATGATACCATTGAACCCAATGAGAAGCCTTTTGACGTTGTTTCCTTTCCTTTGCCTTTCTCTCCTGTTGACTCCTCATCCTTGTCTTCTGTTGGAAAcactccctctgtctctccctcaccATCCTCTCCTGACCTGTGGTCCGCTGCAGAGACCTCAGTAGTGCGCTTCTTACCTCCTTTGCTGAACGATCAGGCACAGAGGGTTCAAGCCCATGAGACATTCCTCCTCTTCTGCCAAGCTGTGGGTCCCCATGATCTCCGCATTCAGTGGCAAGTGAATGGACAGCAGTTAGACAGCTCTGTCACAGAACATAAGCTAACACTGACGAATGGCAGTGTCCTTGTGAGCAGTTGGGTGAGAGAGGACCACTTATGGTCTGACACTCACTATCAGTGTGCAGCCACTTCCAGAACAGGAAATGACACAGCCAAAGTGTTCATCAGATTGGACAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98899 lncRNA downstream 5542 21649128 ~ 21656048 (-) True G79306
TU98898 lncRNA downstream 13253 21647920 ~ 21648337 (-) True G79305
TU98897 lncRNA downstream 13879 21647425 ~ 21647711 (-) True G79304
TU98895 lncRNA downstream 16006 21645145 ~ 21645584 (-) True G79302
TU98894 lncRNA downstream 18057 21643330 ~ 21643533 (-) True G79301
TU98908 lncRNA upstream 23363 21704729 ~ 21746230 (-) True G79309
TU98923 lncRNA upstream 74142 21755508 ~ 21756511 (-) True G79322
TU98925 lncRNA upstream 104080 21785446 ~ 21785701 (-) True G79324
TU98976 lncRNA upstream 335351 22016717 ~ 22017937 (-) True G79368
TU98975 lncRNA upstream 337482 22018848 ~ 22021016 (-) True G79367
AMCG00010265 mRNA downstream 70032 21590968 ~ 21591558 (-) True AMCG00010265
AMCG00010262 mRNA downstream 89078 21541475 ~ 21572512 (-) True AMCG00010262
AMCG00010246 mRNA downstream 488210 21124002 ~ 21173380 (-) True AMCG00010246
AMCG00010247 mRNA downstream 583199 21053624 ~ 21078391 (-) True AMCG00010247
AMCG00010248 mRNA downstream 689164 20967672 ~ 20972426 (-) True AMCG00010248
AMCG00010263 mRNA upstream 75814 21757180 ~ 21772537 (-) True AMCG00010263
AMCG00010271 mRNA upstream 284960 21966326 ~ 21982050 (-) False AMCG00010271
AMCG00010267 mRNA upstream 326048 22007414 ~ 22011792 (-) True AMCG00010267
AMCG00010270 mRNA upstream 349628 22030994 ~ 22043479 (-) True AMCG00010270
AMCG00010269 mRNA upstream 368631 22049997 ~ 22064355 (-) True AMCG00010269
TU98765 other downstream 579765 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 720197 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 3715829 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 3805860 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 3817201 17840992 ~ 17844389 (-) False AMCG00010188
TU98958 other upstream 283163 21964529 ~ 21981974 (-) True AMCG00010271
TU99198 other upstream 1401480 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 1678277 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 4691376 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 10273018 31954384 ~ 31971755 (-) True AMCG00010487

Expression Profile