RNA id: AMCG00010247


Basic Information

Item Value
RNA id AMCG00010247
length 2103
RNA type mRNA
GC content 0.46
exon number 14
gene id AMCG00010247
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21053624 ~ 21081825 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGATTCCTCagatttttattcattaaatgtaaataccCTGAAGGATCCTGTCCTAAAGAAGCTAAGTGAAGTGCTGGACAAGACCAACAACAAAGGATGGCGTAAGCTAGGTGAAATAGTTGCCAATGACAGGCGTTTCAGAGTGAGTATGGAAGAAATGGAGAAATGCTCTCTGAAAGTCTTAGAGCTGGAAGGAAGCCCTTCGCGGAGTTTACTGCGGCTGATTGGAGACCGTGGGTGTTCAGTGAAAGACTTGGTGGAGTTTCTACAGACTATGGGCCATGCAGAAGCCCTCCAATGCATAAAGCCTCCAGCAATTAAAATTATCATCCAGCCACAGTCTCAGGCAGTACTCTCTGGACATACTGTTCGTCTTGGCTGTCATGCTGCAGGACATCCAAACATACAGTACCAATGgttcaaaataaaagaagagataCCTTATGTGCGGCTAGAACATCAGGGAAAATACCGCTGTGAGGTATTCAGTCATGAAGAACATCTATGGACACACGAGGCAGATATTGTGATAGAAGATATTTACGCCTTTGGACACAGTGACTTTGAAAATAGCAGAAACAAAAGTCCTGAAAAGGCTTATGCAACAGACAAAGTGGCCCTGCTGATAGGCAACATGTCTTACCAGAACCACCCGAAGCTCAAAGCCCCTATGGTTGATGTGTATGACCTGACCAATCTGCTCAGGCAACTCAACTTTAAAGTGGTGTCCCTTCTCGATCTTACCGAATCGGAGATGCGCAATGCTGTGGATGAGTTTTTACTGCTGCTGGACAAAGGAGTTTATGGTTTACTCTACTATGCTGGCCACGGCTATGAGAATTATGGGAATAGTTTCATGGTCCCAGTGGATGCACCAAACCCCTATCGGTCTGCCAACTGTCTTTGTGTCCAGAGTATTTTAAAGCTAATGCAAGAGAAGGAGACTGGGCTGAATGTGTTTCTTTTGGATATGTGCAGGAAAAGaaatatTCATGATGACATTATTCCAAATGTTGAAGCCTTGAGAGTTACAGCCAATATTGTATTTGGCTATGCAACgTGCCAAGATGCAGAAGCATTTGAATTGAACTCAAGTGGATTTACAAATGGAGTCTTCATAAAATTTCTCAAAAAACGCCTTCTGGAAGATGAGAAAATCACTGTACTTCTTGACAGAGTTGCTGAAGacatGGGAAGATTTGACCCGACAAAAGGAAAACAGGCCCTGGAGATCCGAAGCAGTCTGTCGGAGAAGAGGGCTCTGACCGACCCCATCCAGCCCAGAGGCTGCTCTGATGAAACCATGGCACGCAATCTGCAATGGGCAAAGGCTCATGAGCTTCCTGAAAGTATGTGTTTATACTTTGACTGTGGAGTCCAAATCAAGATGGGTTTTGCTGCAGAGTTTTCTAACGTGCTGGTTATTTACACTAGCATAGTAAGGAAGCCAGAGGACATGTCTTCCTGCCAGGCATATGTCACTAATTTCACACCGGAACTTGATGTGGATCCTAAGGAGATGAACAAAGGGACGCCAGAGGAAACGGGTAGCTATTTACTTTCCAAAAGCCTCCCACAACACTGTCTGTATACCAGGCTGAGCTCTCTGCAAAAACTAAAGGAGCAGCTTGCATTCACCGTGTGCCTGCAGGGCAAGTTTACTTCAGTGGAGGACCTGGTGGATTGGAGCACAGAGGTGAACATCGGAAAGCCCCTCATTGCCAAACTGGACCTGCACCGCACTATGAGAAGAAACAGCTGTCTGCAAACCTGCCTGATTCCACACAGCCCCTCACACAGCCCCTGCCAAAGCCCCGGAGTGGAGCACTACTACCACCAGTGCTACCCCCAGCAGTACCAGAGCTCCTACCTCGGGGTCTATGATCCAGCCCATGCTCCCCAGGGCACCTGTGGAAGCACCTGTGATTCGGATAGCCTGGATTTCGGCGCCTGTTCCAACTTGCCTCCTTACCACCAAGATAACCCGACTTTAGCAGTTTCGACCAATAGAGTAAACATTCCCATCGAGACCACTGATGACATTAATGAGCTTCAAACCAGTTTTATAGACAGCCTGCAGCTTCATGACAGATACTGA

Function

GO: NA

KEGG:

id description
K07369 MALT1; mucosa-associated lymphoid tissue lymphoma translocation protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98739 lncRNA downstream 1061 21050811 ~ 21052563 (-) True G79179
TU98700 lncRNA downstream 141441 20911411 ~ 20912183 (-) True G79143
TU98642 lncRNA downstream 585928 20467305 ~ 20467696 (-) True G79092
TU98638 lncRNA downstream 636622 20416790 ~ 20417002 (-) True G79088
TU98632 lncRNA downstream 761207 20292143 ~ 20292417 (-) True G79082
TU98807 lncRNA upstream 31196 21109587 ~ 21112212 (-) True G79234
TU98847 lncRNA upstream 408316 21486707 ~ 21487020 (-) True G79257
TU98856 lncRNA upstream 462628 21541019 ~ 21546314 (-) False AMCG00010262
TU98890 lncRNA upstream 558053 21636444 ~ 21637006 (-) True G79297
TU98891 lncRNA upstream 559288 21637679 ~ 21637897 (-) True G79298
AMCG00010248 mRNA downstream 81198 20967672 ~ 20972426 (-) True AMCG00010248
AMCG00010242 mRNA downstream 272655 20770284 ~ 20780969 (-) True AMCG00010242
AMCG00010240 mRNA downstream 451251 20591736 ~ 20602373 (-) True AMCG00010240
AMCG00010239 mRNA downstream 526705 20505376 ~ 20526919 (-) True AMCG00010239
AMCG00010241 mRNA downstream 566484 20486176 ~ 20487140 (-) True AMCG00010241
AMCG00010246 mRNA upstream 45611 21124002 ~ 21173380 (-) True AMCG00010246
AMCG00010262 mRNA upstream 463084 21541475 ~ 21572512 (-) True AMCG00010262
AMCG00010265 mRNA upstream 512577 21590968 ~ 21591558 (-) True AMCG00010265
AMCG00010264 mRNA upstream 583199 21661590 ~ 21681366 (-) True AMCG00010264
AMCG00010263 mRNA upstream 678789 21757180 ~ 21772537 (-) True AMCG00010263
TU98705 other downstream 112231 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 3107863 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 3197894 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 3209235 17840992 ~ 17844389 (-) False AMCG00010188
TU96773 other downstream 9324459 11728503 ~ 11729165 (-) True G77544
TU98958 other upstream 886138 21964529 ~ 21981974 (-) True AMCG00010271
TU99198 other upstream 2004455 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 2281252 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 5294351 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 10875993 31954384 ~ 31971755 (-) True AMCG00010487

Expression Profile