RNA id: TU98856


Basic Information

Item Value
RNA id TU98856
length 881
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00010262
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 21541019 ~ 21572512 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCCTTTGAAGATGCCATAAGGAATCAGACTCAAGGCCCTGTATTGAGTAAGACTGCCTCTGTGGACAACTCCAGCCCTCTCCTGGTTAGAGCGTCAGCCTTCAATGTGAGTGAAGAACTGAATTCACAATTGTGGTACCACAGAGAAATGAGCAGAAAAGAGGCAGAGCAGGTGCTGAAGGAGGATGGAGACTTTCTGGTCAGAAAAAGCACCACAAATCCTGGCTCCTATGTACTGACGGGCATGCACAATGGGCAGGCCAAACATCTTCTTTTGGTAGATCCTGAAGGAACAGTACGGACGAAAGATCATGTATTTGACAGCATAAGCCACCTAATTAGCCATCACCGTGACAACAGTTTGCCAATAGTGTCTGCAGGAAGTGAACTTTGTCTTAAACAGCCAGTAGCAAGAAAACAGTGATCACTGCTTCCACTGGAAAGAACATCAGAACCTGGGATTCACTTTACCCCTGGAGAAGAGCAaatctgaagaagaaaatagagaatatattattattattcaaaattgcTAAAGAAGACagtgtcttttaaatgttttctagaGTCCCTTCGCTTGCTTGGGAGGATAGGAAATTTGTTGATCCAACACGTATAATTTATagaactgtgtttattttattgtgattattgaAATTCTATATTTTTCAAGGAGACATAGGTTTAATGAATAGTTGTTGATTTGGCGTGGTTAAAAAATGCAACTGTTAATTGTTTAGATTAATGGCTAATTTacctgagggggaaaaaaatacgtATTTTAGAATAATCTAATGTTCTAGTTTTGTCTAAGAAGCACAACCAGATTTACATATATGTTGATTAAAGATGGATGAaagcaaatatgtttaaaaaatgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98847 lncRNA downstream 53999 21486707 ~ 21487020 (-) True G79257
TU98807 lncRNA downstream 428807 21109587 ~ 21112212 (-) True G79234
TU98739 lncRNA downstream 488456 21050811 ~ 21052563 (-) True G79179
TU98700 lncRNA downstream 628836 20911411 ~ 20912183 (-) True G79143
TU98642 lncRNA downstream 1073323 20467305 ~ 20467696 (-) True G79092
TU98890 lncRNA upstream 90130 21636444 ~ 21637006 (-) True G79297
TU98891 lncRNA upstream 91365 21637679 ~ 21637897 (-) True G79298
TU98892 lncRNA upstream 92682 21638996 ~ 21640109 (-) True G79299
TU98894 lncRNA upstream 97016 21643330 ~ 21643533 (-) True G79301
TU98895 lncRNA upstream 98831 21645145 ~ 21645584 (-) True G79302
AMCG00010246 mRNA downstream 367639 21124002 ~ 21173380 (-) True AMCG00010246
AMCG00010247 mRNA downstream 462628 21053624 ~ 21078391 (-) True AMCG00010247
AMCG00010248 mRNA downstream 568593 20967672 ~ 20972426 (-) True AMCG00010248
AMCG00010242 mRNA downstream 760050 20770284 ~ 20780969 (-) True AMCG00010242
AMCG00010240 mRNA downstream 938646 20591736 ~ 20602373 (-) True AMCG00010240
AMCG00010265 mRNA upstream 44654 21590968 ~ 21591558 (-) True AMCG00010265
AMCG00010264 mRNA upstream 115276 21661590 ~ 21681366 (-) True AMCG00010264
AMCG00010263 mRNA upstream 210866 21757180 ~ 21772537 (-) True AMCG00010263
AMCG00010271 mRNA upstream 420012 21966326 ~ 21982050 (-) False AMCG00010271
AMCG00010267 mRNA upstream 461100 22007414 ~ 22011792 (-) True AMCG00010267
TU98765 other downstream 459194 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 599626 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 3595258 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 3685289 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 3696630 17840992 ~ 17844389 (-) False AMCG00010188
TU98958 other upstream 418215 21964529 ~ 21981974 (-) True AMCG00010271
TU99198 other upstream 1536532 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 1813329 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 4826428 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 10408070 31954384 ~ 31971755 (-) True AMCG00010487

Expression Profile