RNA id: AMCG00010242


Basic Information

Item Value
RNA id AMCG00010242
length 2499
RNA type mRNA
GC content 0.32
exon number 5
gene id AMCG00010242
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 20770284 ~ 20780969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACACTAACCCATGGTTGAATGCAAAAGTAAATGTTGTTGAAGCAATTGATCTAGTACTTTCTTGTAATTTAACTGGTCTGCGTACCATACAACCTTCCATTACGGtgcctCAAACTAAAGGAAGAGACAAGCCACTTATTAGTTATGTGGGGGATTCCATTGTGATGTACTGTGAATCTGAAAAATATTACCCAATCAACTGGATATGGTATACAAAGAATGATAATGCAATGGCCATTATCAATACTACAATAGACCCACATCGTTACCAAATTACTATTGCACATGGAAACAAATCAATCCTCACAATAATGGGTTTAACAGAGAAGGACTCCGGCACCTTccaatgcagtgcagtgtacagATTTGGATCCAGTGAGGGAGACATTCATCTCAACGTTCTCACTTACATGGTGCCCCTCAAAATATTCCTGGTCATTGCTGCAGAAGTCATTGTCCTTCTCTACAAGAACACCCCGAATTTGCTctacacaaattaatatttggtgAGGATCCAACAAGGTATGAAGACCACGAGGAAAAAGTAGAACCTGCATTATTGGAGGGGGAAAGTGTAggtaaattcaataaaatattacttgGTTTGTATTGGGTAGGCTACATTTTTGTGAGAAAATAACTACTACAGGACAATCATGAAATGTGTACCTCCACAAAAATATGACTTAAGGTTTGTCTGAATTGTGATGGAAACATAGCAGAATAAGTGCAagccattttgtttaaatgttcactATGTACAGGTGTTATCACCTGTAGGCTGCAATTAAGCAGTCCTTGataaatatagatattaatattaattttaatagtcCTACATCTGCAGCAGACAAAAATATCTTAGGGATGAACAAATGCATTTGAGTTTAGTAAACCATTCTGTTGCCTTGCTGTCACTGAGATTATCAATTTGCcgaaaaatgtatgcatttctaGACTATACttaaacaatgtaatgtttacAAAACTAGGAATTGGATAACTATTTATATGGCACTtgtatatagctatatatatattccacacAATACACAGTCATGGGAATAGTTTAGGTTGCTTTGTTCAAGCTATGTGACttgaacttttattttctctcatcattttaaattaaaattaatgcacTGAAAATTTCTCCTTCTGCCAATGCATACATTCCTACAGCATGTTCAGTGACCAGAAATATCAAGGTTGTTTTTACATAATCTGATAATCATTGACCTATACCTAAAATCAGGACATTTTAGTGATTATTAATCATGTCCTTTGTAAACAGATAAATGTTCTCCTAGAATTATGAGCAACTGCACAACCCCAGTGTACCAAAGTATTTGGGTGTAGAAATTCTGAATGGTGTATTATCAATATAATAGTTTGAGATGcatacatgtttgtgttgttactgttgctcttgttgttgttgttgttgttgttgttgtggccATAACTTATAGGACCATTTGCATAAATCTTTTTGCACCCCTCTAACACCGGATTGTTCCAAATAAATAAGTGGTGAAGTGtcaaattaaactttcaaaGAACTCATTCaagttatgaaaaataaattaaatgcttcattagttaaaatatagtttttcaacataaaggggtggaaaatgtatcattatcttttataaatggttttatgaatatggtttACCAAGTCTACCATATATAGTTATATGTGGTTATATAcctttttgcattttcatgtaTACAAAGCAGAGCAGAAAATGATTCTCAAAACCATTTAAACCAgccattaattatattttaaacttgttaCTAAATGACAAGTACAGGTATACATACTATGTTACTTATACAATAAAgagaatgttgttgtttttttgtgttaattttgtttatcacccttcaattacattatatatgaagcaatattaaaataaacaacacattgaCATCTAACAATTGATAGTACTTACTATGAACATCTTACtgataatgtaattattgtttttggaaGGATGTAATGAAGTAGATCatcaaaaatattgtaaatagttATTTTGATCCCAGCTGACTCTTctgatattaaaacaaatgtgttaaaacctCCCCACATATTTTTCTCAAGCTATGATGCTTAATTCGCACACACAAttactttttgatttgtttctagAATGTCCACTCCCCTCCCCAACCATGTATGCCTAGTCCACTATATTACTATACAgtattataatgcatttcaatttagaGATGCACATGAGGTTCATTTTCTGCTGCTTCTGTTTCTGATTATTGTTactaattttattatttgtcattatttcactttaaaactTGATACTTGGTAACCTTCACTGGTGTAGCCAGAAAAGTCTATATCATTCTACTCAATAGATATATTATTCAGAGGTGTGAACTTCAAAAAATACCTTCATGTCTTgtcaaataaacatatatatatatatatattactagaGTGTGCATAATATTTACACAAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98642 lncRNA downstream 302588 20467305 ~ 20467696 (-) True G79092
TU98638 lncRNA downstream 353282 20416790 ~ 20417002 (-) True G79088
TU98632 lncRNA downstream 477867 20292143 ~ 20292417 (-) True G79082
TU98626 lncRNA downstream 567283 20199049 ~ 20203001 (-) True G79077
TU98624 lncRNA downstream 574900 20188787 ~ 20195384 (-) True AMCG00010234
TU98700 lncRNA upstream 130442 20911411 ~ 20912183 (-) True G79143
TU98739 lncRNA upstream 269842 21050811 ~ 21052563 (-) True G79179
TU98807 lncRNA upstream 328618 21109587 ~ 21112212 (-) True G79234
TU98847 lncRNA upstream 705738 21486707 ~ 21487020 (-) True G79257
TU98856 lncRNA upstream 760050 21541019 ~ 21546314 (-) False AMCG00010262
AMCG00010240 mRNA downstream 167911 20591736 ~ 20602373 (-) True AMCG00010240
AMCG00010239 mRNA downstream 243365 20505376 ~ 20526919 (-) True AMCG00010239
AMCG00010241 mRNA downstream 283144 20486176 ~ 20487140 (-) True AMCG00010241
AMCG00010234 mRNA downstream 577355 20188658 ~ 20192929 (-) False AMCG00010234
AMCG00010233 mRNA downstream 585858 20165996 ~ 20184426 (-) True AMCG00010233
AMCG00010248 mRNA upstream 186703 20967672 ~ 20972426 (-) True AMCG00010248
AMCG00010247 mRNA upstream 272655 21053624 ~ 21078391 (-) True AMCG00010247
AMCG00010246 mRNA upstream 343033 21124002 ~ 21173380 (-) True AMCG00010246
AMCG00010262 mRNA upstream 760506 21541475 ~ 21572512 (-) True AMCG00010262
AMCG00010265 mRNA upstream 809999 21590968 ~ 21591558 (-) True AMCG00010265
TU98072 other downstream 2824523 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 2914554 17852867 ~ 17855730 (-) False AMCG00010190
TU98065 other downstream 2925895 17840992 ~ 17844389 (-) False AMCG00010188
TU96773 other downstream 9041119 11728503 ~ 11729165 (-) True G77544
TU95829 other downstream 13707463 7057805 ~ 7062821 (-) True G76762
TU98705 other upstream 150202 20931171 ~ 20941393 (-) True G79147
TU98765 other upstream 294972 21075941 ~ 21081825 (-) False AMCG00010247
TU98958 other upstream 1183560 21964529 ~ 21981974 (-) True AMCG00010271
TU99198 other upstream 2301877 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 2578674 23359643 ~ 23364947 (-) True G79601

Expression Profile