RNA id: AMCG00010267


Basic Information

Item Value
RNA id AMCG00010267
length 2398
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00010267
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22007414 ~ 22011792 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGGATGGAGGGTGGGAGAGCGGAGCACGACCTGCTGTGCGGCCAGAGACAGTGCCTGAGGCCCGGCAGCAGCGATGCGAGGAGCCGCGGCCCGACGAGACCTCGTCCAGTTACCCGCAGTACAGGCGGAGCATTAACATTATCGTTGgcagtatgttttaatttttaaaatgaattctgtAGAGAGTGACATTGTGACTGATCTTAAACAGCGTGGCTTTTATCTCCGGTCCGACGAAGAGAGACGTATAATTGTGAAACAGGGCAGAATAAAACCCGTGCTGGACGTTTTAAGGAAAGACGGGAAAAGAACAAGGCAGTTCCAGGTGTCCTGGTACGGGGTACATAAATGGCTGACCGGCAGCGCTGTGAGCAACAAATTGTACTGCTGGTCCTGTTTGCTGCTGTCAGCCAAAAAATCCGTGTGGACGACTGATGGGTACTGTGACTGGAAGAACCTGGCCCGCAGCGCCACGCTGCACGGCTCCTCGAAGGAGCACCGGAGGAACGAGCTGTCGCTGCGGCACCTGGAGCGCGAAAGCGCCTCTCTGGACGAGCTGCTGGGGGAGCAGAGGCGCCTGGCGCGGCTGGAGCACGACGCGGACGTGCGCGACAACAGAGAGATGCTCAAGAGGCTGGCCCAGGCCTCCGCTGCTCTGGCCCGACCGCAGCTCGCTCGCCGGGACACGCACGCTGCCACCCACCGCGCGCAAGAACGTCTTCCACCTGCTGAGCCAAAGCAAGAAGCAGAAGAAACCCCGCAAGGACCGTTGCTGGTACTGCCACCCCAAGGGCACCCTTCTTATGTGGAGGAATTCAGAGTCTCAGAAACTCCCCGGATCGTGGGCCCACCCTTCACCTCTGTCCCCTGCTCCCTCCCGTACACTCCAAGCACACAACTTCCAGAGCAACAGCATCAGCAGCAGAGCCTTGACACCGGCACCGTGCAGGTGAAAAAGGAACCACAACCTGAGTTTCTGTATACGCCACAGCCCAGTGACGCAGTGTTTAAGGGCCTCAACTTTGACGAGCAGGATAACAACCCTAATTTCATTTCGCTTGGCAACCAGGTTGGTTTACTGGCCCATCAGATAGGAAAGCTGACGGAGCAAGTGGGTGAGATGAGTAGAGCCCTCATGCAGAAGACCAGTTGTGAACAGTTTCAGATGGAGCAGATAACCGTGAATCACAACATTTCAGCCACACTCAGTCTCCTGGCCAAGGCAGTGCTGTCCAAAGACTTCTCTGGGTCCAAACCAGTTACTGACTGCAGTACACAGACTGAATTCTCCAATTGATGCAGCCTGCATGGATCCAGGCAAAAAGACCTTAACATCTTTAATGTGCTGAGAAGAGTTACTATATTATACCTTAAATCTAGTCTCCACCTTTACAGATTGGCTGGAAGattataggaaaaatgccaaacatgttttgtttggtgtttttctttttgatttgttttacatcTTAGTTGTGACAAAATCCTGGCATGTGTACCAGATTTAAGTttagtagttttttttgttggggggATGACTGAAAATATACCTCaggtgtcattttatttaaacaatacaaattgttttactaagaatttattaaatgcacaatttttggaaaaaaacaaagtgtggaTCCTCTTgctaatttgaatatataattaatttggtCTACACATCATAttgtattatactatatattttcttaatttcaacatttattctAAGCACAGGGGTCTCTTTTCCTTCACTAATTCTATACCAAACAGGTGATTTTAGTAACCAACTAACCAAAATACCCAAAACGCATTGTTTTCAAGTCTGaaacctttttctttaaaaccaacaaaagcaataaaattgtttaaaaaatcattaaaacatgCAGTTTAATGATATGTACAATTGGCTTACTTTTCTTGTACATTGATTAGCTTAGTTTGCTTTAGGAAGGAAAAACATGCTCTGAAGGGAACTTGGTTTCCAGGATTTCCAGTTTTTCATTAAGGCTGGTATTCTATAAAATAATTCCAATATAGTGCAATGCCTTTGGGAAGTGATCTTGTAAAGATTTTAGACAAGATTAAAAGTGAATAAGCAATAACACACCAATTGGTCACATACACTgtagaaaagaaatgtaaactCCAATCAACTATAAActaatctttttttctctgttaCAACAGCTACCCTAAATAAAGTTCACAGTGAATGTATGTAAGCCATCAGCTGCATCATCTTATTAGGTACACACTATTAAGTTGTACTAAAAAATCCCttgtcaaaacattttcttcacttcGCACTAATTGCTAAGAACACTTGAATGAATTACATGTGATACACTGCAAGTATTTGTTTAGTTCTACAAAATGATTTCATGAAAAACAC

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0032991 protein-containing complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98925 lncRNA downstream 221713 21785446 ~ 21785701 (-) True G79324
TU98923 lncRNA downstream 250903 21755508 ~ 21756511 (-) True G79322
TU98908 lncRNA downstream 261184 21704729 ~ 21746230 (-) True G79309
TU98899 lncRNA downstream 351366 21649128 ~ 21656048 (-) True G79306
TU98898 lncRNA downstream 359077 21647920 ~ 21648337 (-) True G79305
TU98976 lncRNA upstream 4925 22016717 ~ 22017937 (-) True G79368
TU98975 lncRNA upstream 7056 22018848 ~ 22021016 (-) True G79367
TU98980 lncRNA upstream 17812 22029604 ~ 22029955 (-) True G79372
TU99015 lncRNA upstream 64754 22076546 ~ 22076856 (-) True G79403
TU99016 lncRNA upstream 67411 22079203 ~ 22079441 (-) True G79404
AMCG00010271 mRNA downstream 25364 21966326 ~ 21982050 (-) False AMCG00010271
AMCG00010263 mRNA downstream 234877 21757180 ~ 21772537 (-) True AMCG00010263
AMCG00010264 mRNA downstream 326048 21661590 ~ 21681366 (-) True AMCG00010264
AMCG00010265 mRNA downstream 415856 21590968 ~ 21591558 (-) True AMCG00010265
AMCG00010262 mRNA downstream 434902 21541475 ~ 21572512 (-) True AMCG00010262
AMCG00010270 mRNA upstream 19202 22030994 ~ 22043479 (-) True AMCG00010270
AMCG00010269 mRNA upstream 38205 22049997 ~ 22064355 (-) True AMCG00010269
AMCG00010268 mRNA upstream 57334 22069126 ~ 22076083 (-) True AMCG00010268
AMCG00010273 mRNA upstream 338608 22350400 ~ 22354352 (-) True AMCG00010273
AMCG00010274 mRNA upstream 346190 22357982 ~ 22361854 (-) True AMCG00010274
TU98958 other downstream 25440 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 925589 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 1066021 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 4061653 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 4151684 17852867 ~ 17855730 (-) False AMCG00010190
TU99198 other upstream 1071054 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 1347851 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 4360950 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 9942592 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 10983658 32995450 ~ 32999999 (-) False AMCG00010509

Expression Profile