RNA id: TU98980


Basic Information

Item Value
RNA id TU98980
length 352
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G79372
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 22029604 ~ 22029955 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTTCTTTTAttcctgatatatatatatatatatatatatatatatacacacacacaatatttgtataaatgtatattaaaagagTTTAACTATAATATCTAGTACAATTTGAAACCAAATTATAGTTCAGAAGAATGTCTCCGCTATGATTTGGAAATTGTTTTTACAAAGTTGTCTCATCAGTTTGTCTGAAGCACTTTACAGTTCTTAGCAATGCAATTTCAATGACAGACACAAAGCTGTTACAACTTTTTGTTTAGTAATACTTCAGGGAGCATTGTTAATGCACAGAGCCTCAATTGTGcccaatgtatttttataatgagTTTTATAATTAAGTACAATTTGTT

Function

GO:

id name namespace
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0030054 cell junction cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98975 lncRNA downstream 8588 22018848 ~ 22021016 (-) True G79367
TU98976 lncRNA downstream 11667 22016717 ~ 22017937 (-) True G79368
TU98925 lncRNA downstream 243903 21785446 ~ 21785701 (-) True G79324
TU98923 lncRNA downstream 273093 21755508 ~ 21756511 (-) True G79322
TU98908 lncRNA downstream 283374 21704729 ~ 21746230 (-) True G79309
TU99015 lncRNA upstream 46591 22076546 ~ 22076856 (-) True G79403
TU99016 lncRNA upstream 49248 22079203 ~ 22079441 (-) True G79404
TU99017 lncRNA upstream 54292 22084247 ~ 22084564 (-) True G79405
TU99018 lncRNA upstream 61644 22091599 ~ 22091976 (-) True G79406
TU99019 lncRNA upstream 66883 22096838 ~ 22098788 (-) True G79407
AMCG00010267 mRNA downstream 17812 22007414 ~ 22011792 (-) True AMCG00010267
AMCG00010271 mRNA downstream 47554 21966326 ~ 21982050 (-) False AMCG00010271
AMCG00010263 mRNA downstream 257067 21757180 ~ 21772537 (-) True AMCG00010263
AMCG00010264 mRNA downstream 348238 21661590 ~ 21681366 (-) True AMCG00010264
AMCG00010265 mRNA downstream 438046 21590968 ~ 21591558 (-) True AMCG00010265
AMCG00010270 mRNA upstream 1039 22030994 ~ 22043479 (-) True AMCG00010270
AMCG00010269 mRNA upstream 20042 22049997 ~ 22064355 (-) True AMCG00010269
AMCG00010268 mRNA upstream 39171 22069126 ~ 22076083 (-) True AMCG00010268
AMCG00010273 mRNA upstream 320445 22350400 ~ 22354352 (-) True AMCG00010273
AMCG00010274 mRNA upstream 328027 22357982 ~ 22361854 (-) True AMCG00010274
TU98958 other downstream 47630 21964529 ~ 21981974 (-) True AMCG00010271
TU98765 other downstream 947779 21075941 ~ 21081825 (-) False AMCG00010247
TU98705 other downstream 1088211 20931171 ~ 20941393 (-) True G79147
TU98072 other downstream 4083843 17945235 ~ 17945761 (-) True G78610
TU98067 other downstream 4173874 17852867 ~ 17855730 (-) False AMCG00010190
TU99198 other upstream 1052891 23082846 ~ 23085985 (-) False AMCG00010288
TU99273 other upstream 1329688 23359643 ~ 23364947 (-) True G79601
TU99963 other upstream 4342787 26372742 ~ 26379747 (-) True AMCG00010364
TU101107 other upstream 9924429 31954384 ~ 31971755 (-) True AMCG00010487
TU101338 other upstream 10965495 32995450 ~ 32999999 (-) False AMCG00010509

Expression Profile