Gene
RNA
| Item | Value |
|---|---|
| gene id | G78840 |
| gene name | rcl1,LOC107715679,LOC107655287,LOC107701854 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030129.1 |
| NCBI id | CM030129.1 |
| chromosome length | 41163702 |
| location | 19195662 ~ 19226372 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| rcl1 | Predicted to enable endoribonuclease activity. Predicted to be involved in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within RNA processing and ribosome biogenesis. Located in nucleolus. Is expressed in several structures, including alar plate midbrain region; head; liver; optic tectum; and optic vesicle. Orthologous to human RCL1 (RNA terminal phosphate cyclase like 1). |
| description |
|---|
| PREDICTED: RNA 3'-terminal phosphate cyclase-like protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU98341 | True | 512 | lncRNA | 0.46 | 3 | 19195662 | 19226372 |
| TU98343 | False | 335 | lncRNA | 0.44 | 2 | 19195662 | 19203482 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00010215 | NA | coding | downstream | 23544 | 19130903 ~ 19172118 (-) |
| AMCG00010211 | ric1,LOC107714817,LOC103149555 | coding | downstream | 142911 | 19017231 ~ 19052751 (-) |
| AMCG00010210 | NA | coding | downstream | 227821 | 18957568 ~ 18967841 (-) |
| AMCG00010207 | LOC107665242 | coding | downstream | 242680 | 18929532 ~ 18952982 (-) |
| AMCG00010208 | NA | coding | downstream | 271282 | 18921289 ~ 18924380 (-) |
| AMCG00010219 | NA | coding | upstream | 24727 | 19251099 ~ 19258085 (-) |
| AMCG00010222 | NA | coding | upstream | 183994 | 19410366 ~ 19419417 (-) |
| AMCG00010226 | NA | coding | upstream | 252778 | 19479150 ~ 19536097 (-) |
| AMCG00010225 | NA | coding | upstream | 331060 | 19557432 ~ 19558923 (-) |
| AMCG00010229 | arhgap24,LOC108278970 | coding | upstream | 546247 | 19772619 ~ 19785492 (-) |
| G78815 | NA | non-coding | downstream | 54626 | 19140796 ~ 19141036 (-) |
| G78773 | NA | non-coding | downstream | 185428 | 19006216 ~ 19010234 (-) |
| G78767 | NA | non-coding | downstream | 201066 | 18994173 ~ 18994596 (-) |
| G78761 | NA | non-coding | downstream | 224035 | 18971363 ~ 18971627 (-) |
| G78661 | NA | non-coding | downstream | 1012361 | 18177577 ~ 18183301 (-) |
| G78887 | NA | non-coding | upstream | 103330 | 19329702 ~ 19329921 (-) |
| G78895 | NA | non-coding | upstream | 112402 | 19338774 ~ 19342725 (-) |
| G78897 | NA | non-coding | upstream | 117655 | 19344027 ~ 19345802 (-) |
| G78906 | NA | non-coding | upstream | 135596 | 19361968 ~ 19364446 (-) |
| G78908 | NA | non-coding | upstream | 146656 | 19373028 ~ 19373232 (-) |
| AMCG00010206 | NA | other | downstream | 323580 | 18863268 ~ 18872082 (-) |
| G78610 | NA | other | downstream | 1249901 | 17945235 ~ 17945761 (-) |
| AMCG00010190 | NA | other | downstream | 1339841 | 17852867 ~ 17855821 (-) |
| AMCG00010188 | NA | other | downstream | 1351273 | 17840707 ~ 17844389 (-) |
| AMCG00010183 | stoml2 | other | downstream | 1716871 | 17473829 ~ 17478791 (-) |
| AMCG00010234 | hint2,LOC106585387,LOC107720264,LOC103469931 | other | upstream | 962286 | 20188658 ~ 20195384 (-) |
| G79147 | cplx4,cplx4a,LOC107662952,LOC107719084,LOC107739741 | other | upstream | 1704799 | 20931171 ~ 20941393 (-) |
| AMCG00010247 | NA | other | upstream | 1827252 | 21053624 ~ 21081825 (-) |
| AMCG00010262 | shc3 | other | upstream | 2314647 | 21541019 ~ 21572512 (-) |
| AMCG00010271 | NA | other | upstream | 2738157 | 21964529 ~ 21982050 (-) |
