G76959


Basic Information

Item Value
gene id G76959
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8021115 ~ 8029907 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU96063
CTGCTATACAATACCTTAGTTCAATGCCTGAAAACTTGTGAAATGCAGAATCTTAAATGACCAgtcaaaacatttgtaaatattccAGTAACAGATTGATATTAAGTCTTCCAGCATGTAAGACCAGAAATTATTGattcagggttttattttataggtttaTTCCAGACATCCTGCCCCTCATTTCAGTTTTAGTGCATGGACTGAAGAAATACAAACCGTCACAttctttaaatggttttatttgccCATTGTAATGCAGTAGTACTTTGACAGCGACTGACAAGCATCAAAGAGAGGATGGATTTACAGTTAAACCGCAattacaacacaacagtgacacTTCAAATGTCATGGGCAGACAAGCATttatcttttttcctttcaatttttgCCAAAGGTACTATGCAATATTTAAACCAAAGTAAAGAACTAATCATTTAACTTCCATTAGTAAAGAAAACCTTCAAACTTTAAAAGCCATAATACAACAAATTAACACAATCATGCATGTTAtttctgaaatcaaaatgtGCCGACGCACTTTGCTTTTTACCAACAATTGTAAGACCATATatatgggtgtgtgtgcgtgtgtgtgtatatatatatatatatataggatttattttttagctaGATTCTGAATAGATTTACTACTAAACAAACTTCTCAGCAATCAGTGTCTTTCAGAACTTTAATACAACAATGCCACAGGAACTGCGGATTCACGTGACAGTCTGGAATGAGACCCGACCATGTTGAAATTGTAACCCTTTCCCTGTTCGGTCATTAAACGAGAATTGCATTGTGCAATAAAACATACCTTTAAAATTACACTCagggaaggaaaataataaaagaaaaaacatgtaatgatCTTCATTTGTGTGCTTTACATGGCTACAGACTAAAGCCAACCCCCTTACTCttgcaagttaaaaaaatatatatgctcgTGGCATCTATGATTAGTCCAGGTAGAATTCCTAACGGACACCTAAACATTATACCAGATAATCTACTGCTCCTTTTACCTTCAGAAAAATATGGAAGGGTCTGAAAGTAAAGTAAAGGGGGTTGTTAATATATGGTTTAGAAAGCGGTTGTAAAGCTATTGTGAGGCCAGGTGTGGAGACCTCTTCAGATCAAGACCTGAAGCTGAAACtatacagtacaacacagacacattaAGTCTTTTTAATGTCTTGTAATAACACCCAGCTTATCTGCCATCTGACATGCAAGCTCAGCAGTGACTGAACCACACCCTAGGTCAGACTTTCGTGTTACTGGACTAGAgatcacaaaaatatacaaaaacaaaagaaagaggtaaaaacaaaaacctatgTATACACTGTACTTTAAATTAGTGTGTTTTTCCAGTAAGTGGGTCACTGCCATGGCTAATAGTTGTCATagtcttttttgtctttcttgccCTCTCCTTCAAAAGCGTCAACACCATCGCTGTTGTCCCGCCTTCTCTTGCGGTTGTTGCGGACATTGAAGCGCGGGTTCATCTGGGGCAGGGGGTCCATACCCAAGACTTTGTGAATCTGGCGGAATGCAAGCAGCCTCAGAGCAAACTGGGGAGAGAGGAAACATTCATCTTGGAGATTCAGAGactgcttttaaatgcatttctccaaGTGGGTATACATGGAGCAATACAAAATCAATTGTGATTAATAAAGTCATACATACATAaccaaaatgtgaaattgaaaGTTAAAATGGCATTGGGCTCgatacattgcaagaagaacagagaaAGCTATAGAATAGATACCAAGAAATGAACAAAGACCTAGAAGACTAACACATAAAAGCAGGGAAGATTGAAAAACTGTGCAtgcatgacatggaaaatagaagcaagtggggaggccttcatccagcagtggatcgatgcAGGCGGATGGTGACTGACACGCACACTAAGGTTTCCATAAAGATTATGGCACAAATTTCAAGGCTTGCGATGCAACTACACTGATTTACTGAATGAATATTGGCAATTAAGGAATGTTAAATATGCATTAAGCCATAAATCCGGAGCTGCACTGATGGAGCAGAACACTGCCCTGAGGGCCAGTCTATGGAACTGCCAGTTACTAGAGTATGAGGAGTAGGACACTGGCAACTGGGTTTGCCCATTTGCAAACCATTACAAAATAGCAACATGGCACTCCAGACATACTGAAAGACTTGGTTAAGGAATGGACCAATAACAAAATTGTTGCGAAGGTAAATGTAACTTCCAATCCACACCAAACAGGAAGCATTATGAGATCTTGACATCCTTAATCCCTCCaaggtttaattttgcattgatCACACACTGCACCCTTTAAGCAACACTGCTGTTCGGGTTTTCAACAGCATGTACAAGACTATTTCTATGGCATGCTCAGTAAGACTGATTGTAACAGTGAACGTGTTAACCAAGTCATTTCGGACAAATAGCTGCATGTGCATATTTTTGctcacaaacattttacaaagtttacaaaagctttaataaatttcaattaagggtattttacataattttggCTAATTGAAGAAAGGTTTACTTAATTATCAGTTTGGTAAACTAAAAACGTGACGCTTTGATCATCAGAAATCAAACTCCAAGTATCCCTTTTCAGTTAGATCAGGGCATGCAACTACCCAGTATTATCTAGcagcatttaaaagtaaaaaagaaccATCGGGGGACACAGTACAGTGGGAGAAACGTATGCaaggattttcttttgtttttttaaatataactcgATACAGTAGAAACCTCTCACTAACACCAGAACAGACAAATGGGCACCTTGGCACAGTTTGGCTAAGTCCACCACCCATAGCAAGAGAGCCATTCGGGTGCATTACCTGCGCACTGGATGTGATGTCTTCGCGCTGCTGCTCCGTCATTGCAGTCAGCGTATCGGTGGGATTCTTCTCACAGGGATCAATTAGCCCAGGACCACCTGTTTGTAAAGCACTGGGTTAGTAAAGTGCAGGTTTTCACAGCATTCACAAGCAGCAAGTGATCACCTGTGACAGCACTGCAAAAACCAAAGCAGGTTAATATACAAATTATGGATCTTTTACACAGAAAAATCATTAAGGTCAACTTTAAGTGTTAAGAAGCCACAGATTAATGCGGTTGGGTTGTCAATCaattagcaattaaaatatgcattatacattacacacatacaaactaaATATCTTCCAGCAGCTGCTGTAACAAAGCAACATTGTGTCATTTTGAAGTCTTACCTGGAAGAAGTATCCCAGaggaaatacattcaaaaaccCTCCTCAGAGCATCGCCGGGACTCAACGGCCCAGAAGCACTGCTTATAGCCTTCTCAACGAGCAGCTCCATAGCCTTAAAATAAGAGTTACAGTTTTAATAGTTCTCCATTTCTTGAACATTGACTGTCCTACAAGTCTCCACAGCTGCAGCTAGAGCTCCACATCTAGTTGCAGGGTCTGTGCGAGTAACAGTGTAGTTTTATGCATGTGGAAGTAAAAATGTCAGCATGTGACCATCCTCTTCTGAAGCTCTTCTGTTAAAACATCAGATGCTCTATTCAATCGAAATTATGCACACCACTTACCACAATGACTTGCTAATCATGTGGTGTTGTTGCCTTGTGAAAGAACCACCAAAACTTTTGGATGTACTTTTCCATGTTAGACTgatgaacaaaaataatctcAGTCATAATCTCAGCAAAAACTCAAGCAAGCACTCTTGAAATGTTAATCTGTTGCAGATTTGCGATGCATTGTAAGGGGCTTACAGATGAGGCAGAACTAAATTGtgctttgctttaaaatactgaatattgAAACAAAACTTGAATTTGCAGTATATGAAGATGGCACATGTTTAAAAGGTTTTAGGACtacttaaagctagggtatgcaatcctgagaggccagcagttagtaagcttgttttgaaagcatagagcccacCCTCGATTCAGAGGcatctccaaagccacgccccctctatcacatgcgcgcgcacacacacagcagcgacgtgtgggtggaatcgatcACAACGCTTTCAGATTACCTCAGgtctcattcacaggttagacattacaacaataacaaacgAAAAAACCTATTTATGgtcattatgtttttaaaaatagtagctgtgGCTCGCCTTCCATCctcgcgctcgctctgcacagcgtcaaggttcccgcgctgatgacgcgATTGTCTGCACGAACAAGTTGCGTGGCGGTATGcgaatatagattgacagacaggaaggacatcctatcattacattcagaccaaatgcaatgattggtcgatcctttttagtcctgtcccttccacagaagatatatatattattttacatttagaccacttaaattattgattgctatcaggatgtgaagagactttcaaccagtataacaaaaaatgcttctggaaaagattgcataccgtACCTTTAAAGGCACCTTAAACCGATCACAACCAAAATTTCTACATACACCTCATATCAATAAGGGAAGCCATTTCCCAACTTTAAATCAAGTTGATTACTGGATCTTACAACGGCTCACTTAGCTCTCTCCTAAACATGAAAGTCCAAGTCCAGAGAATGGTCTCCCAAGAGAATTTGCAACAGCCCACCATTCCAGGCAGCTACCTCATCATAAGGCAGAGAGGGCTGTGTAAGAGTTAAGTTAGAGCCATGACGTGCAATCCCTAGTGCTCTGCGACTGCGGCTCAGTTGTCCCAGGGAACGTACACATGTAAAGAGCGCGTCCAGTACTCACCCAGCTCGGGAATGCAGACCAGGTGGGCACACGCTGACAGAGGTCACGGAGAATGCGAATAATAATCACACAGGATTGAAGTCCATTGGCCCTAGCCTTGAGTGCAATAAATTCAAGTTTAGTCAGTCACATTAAATATCAGACAATTACCAAGGAGGATCTTTAAGAGGTGCAACACTACTGTTCACAATGGAAGCTTGGAAAAATATCAATTTTCATGGCCTCAGTTCATTCTGATCAGCTGCCATTCACAGCAGTATTTTACCTCATAGTTAGTAGAGGAGGTCAAAGTTTGCAAGACGCACAAGAAACGACTCCCAGCCACCTTACAAACCCTGACCTCATGGTTCTATATTTCACAAACagtaatttcaattaaatgaaaattaaaaagctcAGAAGAAAAAGCATAGGGACTGATAAAGTCAAGGAAATCTGTTTTAGTTTTCATGTGCATTTGCTAGAATGCAGGTGTCACTGTAAACTAAATCAGATTTTCCTTTACTCTCAACCCCTATTctaaaaaatcagaaaaatacaaaaagctcAACATGAAAGCTCTTATAGATGACACATACTTTGTATGCCAAGTTACTCTGCAGCCTTatggaattaatgttttaaactaaTATTGCAGATAGTGAAATACAATGTCaaaaactttaaatacaaggatgccttttttttttttttttttttttaaatggtgacaGATAAGAACATTTGATTTTTTCTTCCTGATCCTAAGGTAAATTACAATTGGCATccttgaatgttttgttttgtttaatttttaaagataGGATTTCTGAACATATATAACATGAAGactaacatttagaaaaaataaaataaaaaataaaaaatgcatctcATAAGGCTACAATAAGAAAGTAAAATGATCTCGAACCTGGAACCACTTAGCGTGGCGTAGAGCAGCCAGAGCGTCAAGGCATTTTTGCCTGTCCAAGACGTCCGCTGGGTCTTTCACCATACCCGAGGTTACATCTAAAAATGGATCGAATTGTCAAAGGGTGGTGAGGAACGGGTGTTTGACCAGGCGAGCAAGACACTTCTCGTAACACCAACACATTGCCACACATACCACGGTCCCCCCCCCCATCTGAAGACTGAGTTACCCAGTGATGAGAAGGCTGAGCATTCCTTCTCATGCGTCGAATCGAGAGCACAcaataaaaccagaaaaaaggACCTCAATATGAATTGGACTGGATGCTTTGTCCTACCCTATGGAGGAAGCAGTACAGCTAACCACATAGAAAATATTGgggaaatgtgttaaaaacagaaaagagattCTGTTATAATTTGTTGGTGGAATGTAACTGAAGGAACACAAAACTGCTGATCACACCTCACAAGAGATGCAAACTGACAAATCCAcaaagggagggggggaattAAAAGTAAGTGCTACATTTCAAAAATCACTTCAGGCTGTTAGGAGTGAAGGTGAAATATTACATTCTCAATTAAGcagagtttaaatattttttccccccttacCAGTGGTTAAAAATGATGATTGAAGTAGGATTTAAAAATCTGTAGACTGGTACCATACTTCAAGTACAATTTGCTAACTGGAAGAGAAAAAGTTAAATGGATTTTTGTATGCCCGACACAGAAGTATGTGAAAGAGGCTTTTGGCACTTCAAGAAAGGACTACAGTGGAGTGCACACTACACAGGAACCTTCCCCTCTCACTAATAGGACTATTACAATTCCTGCACTGTGTTCACAGTTTAAAGAAAGGTTTAAATGAACATTGTTGAATTACACAAGTTTCCCCAATATACAAAGGAGCTgctcattttttaatttgatgatcATTTGGCACATGTGAAAAAGCAGCCATTCAAAAAACATGATCCActtcagtttggagtttatcatcttcaaaaaagaaaaaataccagGGAGACTACCTTTCCAGCAaaagtacatctTTTGAACAAGATGGCTGAAAGAGGAaaaagatggggaaaaaaaaaaaaaactcccagaTCAGATTCCATCAAAACATCTGAAGGAGACAAGTGGTCTATACGGAACAGACGAGCACTCGAGTGCATCATGGATATCATGAACACTGCATAGCTAATTAATGGAAAGTGGAGAGAGGGATGATAATCTAGAAGAAAAGGTAGTTGGATGCGAGCTCCTGTGCTACCTAGCGCGACATGGTAGGTGTGGCAAAGTGCTTTGGGAAAAACCTTGGTCAAAAATCCTTCCGAAGCCGTGGCAGCCGTGGGACACAGTTCTTGCAGACAGTGCAAGAAGGCTTTGGACTGGATTGGTAAGCTACGGACACATAAGGACAGCGGTCTTGCTGGAAAGAAGGGTGAGCTCCCAGCAAGGGTTAGGACATCACTGCATGCATACCTGTCTCATCTGTCGGTTTTAAATCCCAGAAACACTGTGTACCAATCAGTTTAACCCAGGTCCAACCAAAGATTCCTCTCACAAAGCCTTCCTCCCTGAAGTTTACTGATACTCCCCTAAGGACTCCCAATAGGCAAGAGGCAGCTTTTGGATCAGTGATCAACCGCACAATACAGCCCCATGTTTCAGTATTGaaaaatttatattaaaatgtatgcatttaacaCACCCTTTTGACGTTTCATACTTTTAAGGAAGGGGAAGTGTCGGAGAAGTGCGTTTGCTCCTttatcaaaaacatttcaagctTGAAATTTGTGGGCCTTGATTATGAATATGCCCTTAatgttcatttattatttttctttcatcaaaaccaaatgtttttttctatctcAGAAAGCACATTGATTCACTCAGGGGAGCACTTTCATCTCTACACAGGGGACCTCAGAATGGTGCACCTTTCaccagacaaaataaatatttgtttcctgtGGGGAAGTCATGAATTAAATGTAGCTGGTTTGTCTTTTCCCACCTAATCCCTATACTGCAGGTAGAGTCTACTTTTTGTCATAGTTCCTATAGGTTTGTTTAGCTTTTGACATCTCCATGAATTCCTGAAATCACTTATCTTACTGGAAACAGGTGTATAATAACGGTTATCCCAATAgaacacaggaaacaaaaatgaatctTACCTGGACCTAACTAGAATTACACAATGCAAACACTGATCATGCTggttggatttgtttttcttcaaaagcTTTAGGAGCACTGGAAAAGTGTTACAGAGAACAGCCCAGAGCTTCTCTGCTGGCACATGAAGAGCAGTAACTATGCCAAATAAAATGAGCAAGTAACTACAATAAATGTggcaaagaaaattaataaagcatGGAATATGGATCTTAATGGActttcattcaaataaatttgCACTTAGCATGTTAATCTACATGTAAAGCCCGGATTCAGGTTAATACTGTGGAGGAAACTCAGTCCTACTTTGTAACCCATGCCCCCCCCCGGAAAAAAACGTGAACTGATAATTTCCCCATGTTTGATGCAAGAAACAGATGGTGGAGCCTTCAAAACCATTTCCTCTTAAATAGTGCTATGCAAATAATTTGTCTACACAAATAACTTGCTTcaaagcatgttaaaaaaagtgttcgaaatggaacaaaatacacagaaaaggaACAACTCTGGAGGATTATAAAACCATGACAAGTCGGCCCTTTGGATGTCCATGCGCACGACAGTGTGGGCAACATTCAGTGCAATCCAGCAGGTCTCTACACCAATCCTTTCCAAGCGCCTAAGGGGGGCGGTTACAAAATGGATATTCCAAGGATTTTGAAGGCATCATATACCGTTGCATTAATCCATGGAGACTGCttatattaaaatcacaatccgCTCCACaggtaccaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96063 True 8698 lncRNA 0.39 2 8021115 8029907

Neighbor

gene id symbol gene type direction distance location
AMCG00009981 sub1,tcp4,LOC106568402 coding downstream 21566 7995588 ~ 7999549 (-)
AMCG00009978 LOC105901092 coding downstream 273537 7740664 ~ 7747578 (-)
AMCG00009977 NA coding downstream 321305 7690903 ~ 7699810 (-)
AMCG00009975 NA coding downstream 350153 7661052 ~ 7670962 (-)
AMCG00009974 vcp,LOC107708640,LOC103357444 coding downstream 364939 7644800 ~ 7656176 (-)
AMCG00009994 NA coding upstream 723720 8753627 ~ 8760035 (-)
AMCG00010001 arl15b,LOC107713334,LOC108433533,LOC107595536 coding upstream 808198 8838105 ~ 8943715 (-)
AMCG00010000 NA coding upstream 1002215 9032122 ~ 9057862 (-)
AMCG00010004 tmem175,LOC107744870 coding upstream 1175649 9205556 ~ 9216688 (-)
AMCG00010008 NA coding upstream 1389957 9419864 ~ 9425212 (-)
G76937 NA non-coding downstream 126725 7834671 ~ 7894390 (-)
G76833 NA non-coding downstream 585568 7434691 ~ 7435547 (-)
G76768 NA non-coding downstream 891017 7129880 ~ 7130098 (-)
G76761 NA non-coding downstream 964146 7056706 ~ 7056969 (-)
G76756 NA non-coding downstream 1036123 6983972 ~ 6984992 (-)
G77050 NA non-coding upstream 667771 8697678 ~ 8700141 (-)
G77163 NA non-coding upstream 1173483 9203390 ~ 9204115 (-)
G77172 NA non-coding upstream 1222351 9252258 ~ 9252590 (-)
G77183 NA non-coding upstream 1346272 9376179 ~ 9378011 (-)
G77193 NA non-coding upstream 1386537 9416444 ~ 9419356 (-)
AMCG00009962 NA other downstream 731421 7284862 ~ 7289694 (-)
G76762 NA other downstream 958294 7057805 ~ 7062821 (-)
G76752 LOC101154678 other downstream 1084047 6936718 ~ 6937068 (-)
G76684 NA other downstream 1350989 6666606 ~ 6670126 (-)
G76463 NA other downstream 2120131 5894675 ~ 5900984 (-)
AMCG00009987 NA other upstream 165828 8195735 ~ 8207327 (-)
AMCG00009989 NA other upstream 284202 8314109 ~ 8321344 (-)
G77544 NA other upstream 3698596 11728503 ~ 11729165 (-)
AMCG00010082 NA other upstream 5317634 13347541 ~ 13470255 (-)
AMCG00010142 LOC104932682,LOC108255669 other upstream 8179412 16209319 ~ 16224041 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G295758 NA non-coding CI01000082 null 2682412 ~ 2682945 (+)
tiger barb (Puntius tetrazona) G36765 NA non-coding NC_056703.1 CM032072.1 15295704 ~ 15300356 (+)