AMCG00010938 (dhdds,LOC107564097,LOC104959484,LOC104959477)


Basic Information

Item Value
gene id AMCG00010938
gene name dhdds,LOC107564097,LOC104959484,LOC104959477
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5141224 ~ 5149261 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010938
TGTGTATGCCCTCACTAAGATGGCGTCTATTTCTTCCAGTGGGGTGGCGAGTTTTGTGTACGTCACGAAAAGGCTCAGCTTAATGACGCGGGGACGCTCAATGCGGAAGAATACGTCATCTTAAAGGACGGGCGCCTCTTCACAAGATGTCGTGGATCAGGGAGGGCGAGCTGACACTGCTGGAGAGGTTTTCTGCAAATATTCTGAAGGCTGGGCCGATGCCAAAACACATTGCTTTCATAATGGATGGCAACCGACGCTACGCCCGCAAACAACACGTCGAGCGGCAGGAGGGCCACACGCAGGGCTTCGACAAGCTGGCTGAGACACTACGCTGGTGTTTAAATCTGGAGATCCAGGAGGTGACGGTCTACGCGTTCAGTATCGAGAACTTCAAACGCTCCAAAGAGGAGGTGGATGGCTTGATGGAGCTGGCCAAGCAGAAGTTCGGCAAACTCCTGGAGGAGCAGGACAATCTGGAGAAGCACGGGGTGTGTATCCGAGTGCTGGGAGACCTGAGCCTCCTGCCCAAAGACCTGCAGGAGGTCATTGCCCGGGCTGTGCTGGCCACCAAGACCCACAACAAATGCTTTTTGAACGTGTGCTTCGCCTACACTTCCAGACATGAAATCAGCAACGCCGTGAGAGAGATGGCGTGGGGGGTGGAAGAGGGGCTCATCAAACCCAGCGATGTGTCCGAATTCCTGCTGAGCCGATGCCTGTACACCGGCAACTCCCCTGACCCCGATCTGCTCATCCGCACGTCCGGGGAGGTCCGGCTCAGCGACTTCCTGCTCTGGCAGTCCATCCTGTGGCCAGAATATTCCTTCTGGAACCTGTGCGACGCCATCCTGCAGTACCAGCTCAGTCACTGCTCCCTGCAGGCAAGTCCCTTTGCCCTTCTCCTTCagggttggAAAGCCAGGGATCGGCACCGAGAGGACCAGGCGCTGCAGCAGCTGGAGGCCGACCGGCTCTGTGTGTCCGACCTGCTGCAGCGGGAGGGCGGGGGGCGAGCCTCGGACCCCCAGCACCggcaggagctgctgcagcGCTACACGGCCGCCCGGGAGAAGCGGGTGCACGGCTTCCTGCGCAGCCTGCAGCAGAAGAGGGACCGCTTCTTCACGGACTTGAACGCGTCCCTGGCGTCCGTCAGCGCCTAGCCTCGGTGCCCAGGGAAGAGAGACCgaggtggggggcagggggtggcAATGGAGGAcgtttctatttaaaatgtgtacataatCGGCAATTTTACCCCTATGGGGCACGTGCGGAGAAAAGAGAAGGACTTCCTAGACTTGAAATAAACAGTTTCTAACACTatgctgattttaaatgtataaatactttcaatgttgtttttgtcttcccTTTCCCCCCCGACTCCCCCACAGCCATTTCTGTGTCAGGTTGTGCCACTGCAAAACAGGCAGGCGAATAATGTATCCTGACTTTGGGGGACTCAGCCAGCATACTGTAGTCACGATGTCCtgtaaaagtgttttattgcttttgtaAAATCATGAAATCtacagtattattaaaaaaataaacacccaaAAAACAGCTTTCTTGGCAGGAATGTAATTCTTTCTCTTGCTTGTTATTCTGGAATAGTACACTAATGGTGGTTAAATGGTGGTGCTTTAGAAAATAACACCGGGCAGATGTATTCCCCAGCACCAATAGGGAGCCACTCACAGCAGAGGATGCTTATTTTAAAGTTGATGACCTTGAAAAGGTTGCAATTTGTTGTCAATATTTTCACAACACATCAACTAACATTTACTACAAACTATAGAAAACTTTCTGGAACATCTACAGTTTGGAAGCTGCAGCTAACAAAAGAACAGTAAGGATTCAAATGCTGACTAATTTATAGCAATAAAATCTGATGACAGTTGCTTTACGTCTTCTGGTGTGTTATAGGAAGTCATTGCTTTCAGATATCTTGTTGTTTTAAGGTGGGCTTATTGTCAAATTGATGCAATCCTACAAGc

Function

symbol description
dhdds Predicted to enable dehydrodolichyl diphosphate synthase activity and polyprenyltransferase activity. Acts upstream of or within detection of light stimulus involved in visual perception and eye photoreceptor cell development. Predicted to be part of dehydrodolichyl diphosphate synthase complex. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in developmental delay and seizures with or without movement abnormalities and retinitis pigmentosa 59. Orthologous to human DHDDS (dehydrodolichyl diphosphate synthase subunit).

NR:

description
PREDICTED: dehydrodolichyl diphosphate synthase complex subunit DHDDS isoform X3

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K11778 DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010938 True 2006 mRNA 0.51 9 5141224 5149261

Neighbor

gene id symbol gene type direction distance location
AMCG00010940 NA coding downstream 37827 5096591 ~ 5103397 (-)
AMCG00010934 LOC106605147,LOC101067841 coding downstream 110694 5002886 ~ 5030530 (-)
AMCG00010931 NA coding downstream 159771 4978936 ~ 4981453 (-)
AMCG00010932 NA coding downstream 243667 4894919 ~ 4897557 (-)
AMCG00010930 man1c1,LOC101464129,LOC100705345,LOC105006133 coding downstream 302165 4816733 ~ 4839059 (-)
AMCG00010944 NA coding upstream 26638 5175899 ~ 5203631 (-)
AMCG00010947 NA coding upstream 186585 5335846 ~ 5347367 (-)
AMCG00010945 id3 coding upstream 204682 5353943 ~ 5355562 (-)
AMCG00010948 NA coding upstream 224598 5373859 ~ 5383129 (-)
AMCG00010949 NA coding upstream 251028 5400289 ~ 5410795 (-)
G103149 NA non-coding downstream 715652 4425354 ~ 4425572 (-)
G103095 NA non-coding downstream 988476 4152518 ~ 4152748 (-)
G103094 NA non-coding downstream 990307 4150499 ~ 4150917 (-)
G103087 NA non-coding downstream 1001587 4138620 ~ 4139637 (-)
G103050 LOC103376870 non-coding downstream 1356593 3784257 ~ 3784631 (-)
G103309 NA non-coding upstream 182471 5331732 ~ 5334257 (-)
G103329 NA non-coding upstream 210714 5359975 ~ 5378226 (-)
G103362 NA non-coding upstream 409416 5558677 ~ 5615853 (-)
G103473 NA non-coding upstream 1235220 6384481 ~ 6386604 (-)
G103503 NA non-coding upstream 1364602 6513863 ~ 6514123 (-)
AMCG00010939 NA other downstream 715 5134053 ~ 5140509 (-)
AMCG00010937 NA other downstream 12083 5115715 ~ 5129141 (-)
AMCG00010925 srsf10,LOC108426370,LOC101486875 other downstream 490818 4642652 ~ 4650406 (-)
G103112 NA other downstream 955250 4169793 ~ 4185974 (-)
AMCG00010901 NA other downstream 1566409 3553986 ~ 3574815 (-)
AMCG00010946 NA other upstream 135069 5284330 ~ 5325424 (-)
G103395 NA other upstream 555509 5704770 ~ 5748564 (-)
AMCG00010966 NA other upstream 815872 5965133 ~ 5974307 (-)
AMCG00010988 NA other upstream 1479309 6628570 ~ 6644723 (-)
G103832 NA other upstream 2788876 7938137 ~ 8027031 (-)

Expression


Co-expression Network