AMCG00011084 (dlgap3,LOC106933674,LOC106958363)


Basic Information

Item Value
gene id AMCG00011084
gene name dlgap3,LOC106933674,LOC106958363
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9601377 ~ 9619279 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011084
ATGAAGGGTTACCATGTAAGCCGGAGTCTGTCTCAGCACTCGTCCTCGGGGCCATGCCACTGTATCCCTGAGGACTGCAACCTGCCGCGTGACTACATGCCACACACAGGACTCTCACAGGACGCCCGTGCCTCCTTCGAACATTACCAGGGACTCAACGACCATCCTTCCTATTACCCCCCAGGGGGCCCGCCTGAGCCATTACCCCAGTCCAGTGGGGGCAGGGGTGGGGACGGTGGTGGAGGCGGGGGCACTTTCCCTCGCTCGCACCCCAGCCAGACTTACGACTCGTGCGAAGAATGCCTggcctcttcctcctctgctcAGCatccccacccctcctcctccaagATGCACCGACTTCCCCCTAATCTGCTGGACCAGTTTGAGAAACAGCTGCCTTTCCAACCAGATGGCTTCCACACCCTGCAGTACCAGCGGGCAGCCAGCGGGGAGCAGCGCAGTGAGAGCCCCAGCCGCATTCGCCACCTGGTTCACTCGGTGCAACGGCTCTTTGCCAAGTCCCACTCCCTGGAAGCGCCCTCCAAGCGGGAGTTCAACGGCACACGCTCAGAGTACCGGGGTGGGGCAACACGAGGCGCAAGCGAGGATGGGAACTACCACCACTACCCGCCCCCCCAACACCACGTCTCCCGGCAGCAGCGCCGCAGCAAGAGCCGGGAGCGCAGCAAGAGTGGGGAGCCACGGCACCGCAGCAAGACAGCCGGCTGGTGGAGCTCCGACGACAACCTGGACAGTGACAGCAGCTTTCTGGTATCAGTGGGGGCAGCTGGCAGGGCAGGGGCACCTCCCAGCCAGGAGGTCCTTGATGGCGTGATCCAAGACCTGACGCTCAAGACCCTCAAAGCCAAGGGACCACCAGGAGAGTGCCTGGCCTGCACCAGCATGGCTCTAGCGGGGGAGTCAGGCCATTCCCTGAAGAGGAGCACCTGGTCCTCCATGACAGTAAGCCAAGCCAGGGAGGTATACCCCTCTAACCGGGCTGGCTACGACAAGGCCCTGGTGCCGCTGGAGCCAAGCAAGTCCAAGGACCGCAGCTATCAGTATCTACAGGTGCCCTCTGACGAATGGGCAGGGGGGTACCCGGCGGGCGGccaggagggtgggggggagatcCCATGCCGTCGGATGCGCAGCGGCAGCTACATCAAGGCTATGGGGGATGACGACAGCGGGGACTCGGATGCAAGTCCCAAGGCCTCCCCCAAAACAGCCATCATAGCCCAGAGAGAAGCTTTCCGACGGTCAATCAGCATGGACCAGCGATCCTCCAACGCCAAGTACTCCTGTAAACAGTGCACCGATTCGTACTCTAACAGCCGCACCGCACCCAAGGGGAGCTCCAGGTCTCGCAGCTACGCTCGCTCTCTGACCAGCTCACAGCTGGGCGAGACGCTGAACCGCCAGTTCGAGGCGGTGTGTGAGTCCGTGTTCGGGGAGGTCGAGTCTCAGGCCGTGGATGCACTGGACCTGCCCGGCTGCTTCCGTATGCGCAGCCACAGCTACATCCGCGCCATCCAGGCCGGTTGCTCGCAGGACGATGACTGCCTGTCTGTGTTCTCCCTGTCCGGTACACAGGGGGGCGGCAAACCTGGGGCCGTTTTCCAGTACAGGAAAGcaccccctcctcttcctccccgcATCTCCAAGCCCCTGATTTCGGTCACGGCCCAGAGCAGCACAGAGTCCACACAGGACGCCTACTACCAGAGCACCGGGCAGCCGGCCGCCGGACGTCCCAAACAGCACAGCAACTCCGCCGAGAGCCTCGAAGGTGGCGGCCGCTCGTCCCGAACTGGCCACTACCAGAGCGGGACAGGTTCCAACACGGGGCGCAGCAAGCAGCACAGCAACTCAGCAGAGAGTCTGGATGGCAGCAGGGGGGTCAGGGACATCTATTACCACGGAGGGCAGGGGACAGTCAGGGCCAAGCAACACAGCAATTCTGCAGACAGCCTGCTGGAAGGAGGCAGGAGCTCTCGGGACCGGGCTGGGGGCAGCCTAGGGAAGTCCGCCTCCCTCCCCCAGAACAGCATCTCCAGTGGCAGGGGGGGCCTCCCTGCGCAAGAGGAGCACAAGCAGGAAGTCCGAGGCCGGAAGTGGAGGCCATCCATCGCTGTACAGGTCGACAGCTCAGAGACCCTCTCAGACTCAGACACAGAGAGCAAGGCGCTGAAGGAAGTTCACTCTATCGGCGTCCAGGTGGAGGAGGATAAGAGGCGCGCCCGCTTCAAGCGCTCCAACAGCGTGACGGCGAGTGTGCAGGCCGATCTGGAGACCGAGGGCTTCCCGGCGCTGGGCATCTCCATGCAGGACAAGGGGCTGCAGTTCGGCTGCTCCTTCCAGCGGCACTCCTCTGAGCCAGAGTCGGCGGGCCAGTACAGCGAGTACCGCACAGTCCACACGCAGGGCCAGTGGGCCTACCGAGAGGACTATCACAGCGCCTACGACAGCGGGCCCAGCTCCATGAGCGCACCGGCCCCCGCGGCCGCTGAGCGCCTCTGGCAGTCTGAGGGCCCCCGCAGCCTCCCTGACTCGGGCCAAGCCTCGCCCTGCCTCCGCGACGGGGAGTTCTTCCTGCGGCTCCTGCAGACGGAGGTGGAGAGGATGGAGGGATGGTGCCAGACTatggagagggaggcagaggagAATGACCTGCCAGAGGAGActCTGGAGAAGATCCGGAGTGCGGTCGGGAGTGCTCAGCTGCTGATGTCTCAGAAGGTGCAGCAATTtttcagactgtgtcagcaaagTGTGGACCCCTCTGCGTACCCCCAGCCCAGTTCCCAGGACCTGGCTGGCTTCTGGGACCTGCTCCAGCTGGCAATGGAGGACGTTCGAGCCAAGTTCCAGGAGCTGCAGAGAATGAAGGATGCTGGCTGGAGACCAACGGACAAGAAGgaAGAGAAAAAGGCTCCTCCTCCGTTACCAAAGAAGCCTGTGGCAGGAGCTGGGGTTAGCGTGGGGGGGCTGGTGATCTCGAGGGGGGGGAAAGGTCTTCCAATGAGAGAGAAGTCGCTGGATCTGGGCGACCGGCAGCGGCAGGAAGTCCGGCGGAGGCTGCTGTCTGCCAAACGAGCCGCTTCTTTCCGGCAAAACTCAGCCACGGAGAGCGCTGAAAGCATTGAGATATACATCCCTGAGGCCCAGACCCGGCTCTGA
>TU130252
GGGATGGTGCCAGACTatggagagggaggcagaggagAATGACCTGCCAGAGGAGActCTGGAGAAGATCCGGAGTGCGGTCGGGAGTGCTCAGCTGCTGATGTCTCAGAAGGTGCAGCAATTtttcagactgtgtcagcaaagTGTGGACCCCTCTGCGTACCCCCAGCCCAGTTCCCAGGACCTGGCTGGCTTCTGGGACCTGCTCCAGCTGGCAATGGAGGACGTTCGAGCCAAGTTCCAGGAGCTGCAGAGAATGAAGGATGCTGGCTGGAGACCAA

Function

symbol description
dlgap3 Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within signaling. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Orthologous to human DLGAP3 (DLG associated protein 3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011084 True 3186 mRNA 0.63 10 9601377 9619279
TU130252 False 281 TUCP 0.58 3 9601884 9602741

Neighbor

gene id symbol gene type direction distance location
AMCG00011077 heyl,LOC105919519,LOC108238519,LOC102235766 coding downstream 85081 9508584 ~ 9516296 (-)
AMCG00011078 NA coding downstream 102294 9489542 ~ 9499083 (-)
AMCG00011071 pabpc4,LOC107659242 coding downstream 112730 9474557 ~ 9488647 (-)
AMCG00011072 ppie coding downstream 128302 9468676 ~ 9473075 (-)
AMCG00011070 NA coding downstream 141082 9455891 ~ 9460295 (-)
AMCG00011083 NA coding upstream 125969 9745248 ~ 9749899 (-)
AMCG00011085 LOC103394203,LOC106611221,LOC107679991,LOC107081232,LOC101155527,LOC107101634,LOC103461506 coding upstream 133417 9752696 ~ 9753490 (-)
AMCG00011092 NA coding upstream 840283 10459562 ~ 10479148 (-)
AMCG00011103 NA coding upstream 1750421 11369700 ~ 11395747 (-)
AMCG00011104 NA coding upstream 1812427 11431706 ~ 11434381 (-)
G104126 NA non-coding downstream 188455 9410589 ~ 9412922 (-)
G104098 NA non-coding downstream 335890 9237791 ~ 9265487 (-)
G104055 NA non-coding downstream 635798 8965372 ~ 8965579 (-)
G104054 NA non-coding downstream 636096 8964717 ~ 8965281 (-)
G103999 NA non-coding downstream 790355 8806470 ~ 8811022 (-)
G104272 NA non-coding upstream 1104311 10723590 ~ 10723956 (-)
G104278 NA non-coding upstream 1326722 10946001 ~ 10946274 (-)
G104315 NA non-coding upstream 1796911 11416190 ~ 11420103 (-)
G104319 NA non-coding upstream 1801470 11420749 ~ 11426225 (-)
G104341 NA non-coding upstream 1891944 11511223 ~ 11593619 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other downstream 365149 9222268 ~ 9236228 (-)
AMCG00011051 NA other downstream 737326 8819551 ~ 8864051 (-)
G103832 NA other downstream 1574346 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2956654 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 3627070 5965133 ~ 5974307 (-)
AMCG00011086 NA other upstream 121854 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 2339959 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 2371550 11990829 ~ 11997786 (-)
AMCG00011135 NA other upstream 2447216 12066495 ~ 12069079 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other upstream 2706818 12326097 ~ 12328282 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014201 dlgap3 coding NC_007130.7 CM002903.2 37458610 ~ 37492517 (+)