XLOC_014201 (dlgap3)


Basic Information

Item Value
gene id XLOC_014201
gene name dlgap3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 37458610 ~ 37492517 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028247
ATGAAGGGCTACCAAGTGAGTCGCAGTTTGTCACAGCATTCCTCTGGGCCTTGCTACTGCATGCCAGAGGATTGTGACACTGCAAGGGACTACATGCACCACCCTGACCATTACCAGGGACACAATGACCACCACTACTACCCACCCGGTGGGCCCCCTGAACCACTGGCCATGGTCCCATCTGGTGGAGGCACCTTCCCTCGCTCACACCCCAGTCAGCCGCAGCACTTTGACTCCACATGTGAAGAGTGTCTATCCTCGGCAGGGCACGGCCATGGTCATGGAGGAAAGATGCATCGTATCCCACCCAACCTTCTGGATCAATTTGAGAAACAGTTGCCCTTTCACCCTGATGGCTTTCACACCTTGCAGTACCAACGCACAGCCAGTGGGGAGCAGCGGAGCGAGAGTCCAAGTCGCATACGGCATTTGGTAAACTCTGTCCAGCGTCTTTTCGCCAAGTCTCATTCTCTAGAAGCACCCTCTAAACGTGAATTCAATGGGACTCGTGGAGGAGAGTACCGGGAAAGGGAAAGGGGGCACCGCAGCGGTGGTGAGGAAAGCGGCGGACATCATTATTCAGGAACACACCAGTCTCGGTCAGCTCGCCGTAACAAAAGCCGAGAACGGAGCAAGAGTGGAGACTCCCGCCATGAGTCTCGAAGTTCCCGTCACCGCAGTAAAACAGCCGGCTGGTGGAGCTCTGATGACAACCTGGACAGCGACAGCAGCTTTCTGGTGGGTGCAGGCAGGGGTGTTCGAGGTTATCCCACCGGACACGAGACCCTGGATGCTGCCATTCAGGAACTTACCTTAAGGAAATCTAAAGGTCCACCTCCTGGAGAGTGCTTGGCTTGCACCAATATAGCCATGACAGGGGACAGCGGACACTCTCTGAAGAGGAGCACGTGGTCATCCATGACGGTCAGTCAGGCTAGAGAGGTCTATCCATCTTCACGTGGAGGAGGCGGAGGTccaggaggaggtggaggaggataTGAGAAGGCATTAGTTCCCTTGGATCCCAAAATGAAGGAACGTTCACTACACCATCTGCAGGTGCCCTCAGATGACTGGTGTGGTGGTGGTCCATCCGACAGCGGTGGAGAGATTCCCTGCAGACGTATGCGCAGTGGCAGCTACATTAAGGCCATGGGGGATGATGACAGTGTTGACTCAGACACCAGCCCCAAAGCCTCACCCAAATCAGCCCTCATTGCCCAGAGAGAAGCCTTCCGCCGCTCCGTCAGCATGGATCAACGCTCCTCCACAACATCCAAGTATTCATGTAAACAGTGTACAGATGCCTACCCAAACAGTCGAACCACACCTAAAGGTCACGCTCGCTCCCGCAGCTACACCCGCTCTCTGACCAGCGCTCAGCTGGGCGACACTCTGAACCTGTTTGGAGAGATGGAATCACAGGCTGTGGAGGCACTGGATCTACCTGGATGTTTCCGCACACGCAGTCACAGTTATGTACGAGCAATCCAAGCCGGATGCTCCCAGGATGATGACTGCCTGTCTGTCTTCTCCATGTCTGTCCCACAAGCGAGCATGAAGGGCGAAGCAGTGTTCCCATATAGGAAAGGACCCCCTCCTCTTCCCCCAAGAATGTCCAAACCAATGATCTCTGTGACCGCTCAGAGCAGCACTGAGTCCACTCAGGACGCTTACTTCCAGAGTACAGGACAACCAGCTCTGGTCCGTCCCAGACAGCACAGTAACTCAGTGGACCTGACGGAGAACAGTGGGGGCCGTACTTCTAGAGGTGGACACTACCTTGGCGGAGGCACAGCACGGGTCAGACAGAGCAGCAACTCGGCAGAGAGTCTGAATGGCAGGGCCCTTCAGAGCATCGCCTATCATAGTGGACCTGGGCCAATGAAACCGAAACACAGCAGCTCGGCCGATAACCTGCTAGAGGGACCCAGGGGATCCAGAGACCGGGTTGGAGGCAGTCTGGGAAAATCTGCTTCTCTGCCCCAGAACAGTATGTCCCTAGCTAAAGCTCTGACTGTTGGGGAAGAGTTTAAACAAGAAGGTCGAGGGAGGAAGTGGAGACCCTCTATCGCAGTGCAGGTGGACAGCTCAGAGACATTGTCCGACTCAGACCCTGAAGGGAAAGCGCTGAGAGAGGTGCATTCCATAGGGGTTCAGGTGGAGGATGACAAGAGACGAGCACGTTTCAAACGCTCCAACAGCGTAACGGCAAGTGTCCAGGCTGATCTTGAGACAGAAGGCTTTGGAGGACTGACCGTCCCCACTCAAGACAAGGGGCTGCAGTTTGGCTGCTCATTCCAGCGCCACTCATCTGAACCAGAATCAGCCAGTCAGTTTGCAGAGTATCGCACTGTACACACACAGGGCCAATGGGCCTACCGTGAGGATTACCACAGTGGGTACACCACTGAACCCGGCCCTCCAGAACTAAGGGCCCTGCCCCGCTCTCACTCCCCTCTGCCTCTGGCCCCCGAGCGTGGAGTGGGAGGATGGAGCGAGGGCCCCCGGAGCCTCCCAGATTCAGGCCGAGCCTCGCCTTGCTTACGAGATGGAGAGTTCTTCCTCCGGCTCCTGCAGACAGAGGTGGAGAGGATGGAGGGATGGTGCCAGAACATGGAGAGAGAGGCAGAGACGAATGAATTGCCGGAAGAGGTGTTGGAACTCATCAGAGGAGCTGTCGGCAGTGCTCAGATGCTCATGTCACAAAGAGTCCAGCAGTTTTTCAGGATGTGCCAACAGAGTGTGGATCCTTCATCATACCCTCAGCCCACTACTCAGGATCTGGCCAGTTTTTGGGACCTCCTCCAGCTAGCCATCGAGGACGTCAGGGTGAAGTTTCAGGACCTGCAGCGGCTGAAGGACTCAGGCTGGAGATTGCCTCCTGAGAAGAAGGAGGACAAGAAGGTTCCACCTCCATTACCAAAGAAGCCCATCGGCGGCGTAACTGGCAGCCTACGGGCCGACAGCACCGCTGAATCCGGAGGCATGCTGGTGGTCTCGCGTGGACGTAGCTTGCCTGAGCGGGAGAAATCGCTGGATGTAGGTGACCGGCAGAAGCTGGAGACTCGCCGCAGGCTTCTCCAGACCAAACGCTCAGCCTCTTTCCGGCAGAATTCTGCGACGGAGAGCGCCGACAGCATCGAGATCTACATCACGGAGGCTCAGACGAGACTCTGAGTCTGTCGGATCTCTCCAAACAACCACTACGACTCTTCTGCACAGACGTAACAAGATGGCGGCCAGAGAGCGAGTGCAATTACTTTTCCTTTTAGTTTGATGGAGAACTAGAGATGGCCTACTTGTATGCTGCTGGTGTTCGGATGCGAGCTTACacgtcttctttttttttattttgttgagcAAGTGTTATTATTCTCCGAAAAAAAGGGCTCAACCAGCACAACCAAGTGTTTGAAGATTGAGATTTTTGTAAGTCCACAAAATATATGAGAAATCTTAGGACTGTTTTAATGAACCACGCCAACACATACGGGTGCAATATCATATATTACGAGGATCTTATcttgttgttttaaataatagaTCTTGTTTTGATATAATCTTGGCTGTGTATGTTTCTTCATTGGTTCCACAGTGTGGCGGACGTAGCCTCTTTCACTGTGACACTAGCGCGCTCTTGTGGCCAGAGTAGAGCAATGCACCCTAATGTAATACTGGGCCAGTGCAGTAGAAAACACATCTTTTGCAGTATAGAGAAATgcctttttcaacaaaaaaagccaGTTATCATTTTGTTTTTCACAGGGATCCTTCTCCTGTATAGTGCAATATCTTATTGCGATTGCATTCAGGCTTCTTGCCGCCCAAGACACGCTcctaaaa

Function

symbol description
dlgap3 Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within signaling. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Orthologous to human DLGAP3 (DLG associated protein 3).

GO:

id name namespace
GO:0023052 signaling biological_process
GO:0098962 regulation of postsynaptic neurotransmitter receptor activity biological_process
GO:0098978 glutamatergic synapse cellular_component
GO:0099572 postsynaptic specialization cellular_component
GO:0060090 molecular adaptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-413 Predicted to enable molecular adaptor activity. Predicted to be involved in regulation of postsynaptic neurotransmitter receptor activity. Predicted to act upstream of or within signaling. Predicted to be active in glutamatergic synapse and postsynaptic specialization. Orthologous to human DLGAP3 (DLG associated protein 3).

Ensembl:

ensembl_id ENSDARG00000055459

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028247 True 3846 mRNA 0.54 10 37458610 37492517

Neighbor

gene id symbol gene type direction distance location
XLOC_014200 smim12 coding upstream 319158 37135700 ~ 37139452 (+)
XLOC_014199 pef1 coding upstream 324399 37120491 ~ 37134211 (+)
XLOC_014198 cx30.9 coding upstream 338719 37118547 ~ 37119891 (+)
XLOC_014197 CABZ01036526.1 coding upstream 778403 36680091 ~ 36680207 (+)
XLOC_014196 NA coding upstream 830976 36625129 ~ 36627634 (+)
XLOC_014202 NA coding downstream 1802 37494319 ~ 37498679 (+)
XLOC_014203 si:ch211-250g4.3 coding downstream 17121 37509638 ~ 37519610 (+)
XLOC_014204 NA coding downstream 77144 37569661 ~ 37570676 (+)
XLOC_014205 thsd7aa coding downstream 127825 37620342 ~ 37842003 (+)
XLOC_014206 CR627498.1 coding downstream 177143 37669660 ~ 37669774 (+)
XLOC_014195 NA non-coding upstream 878772 36578914 ~ 36579838 (+)
XLOC_014194 AL732499.1 non-coding upstream 1215702 36242791 ~ 36242908 (+)
XLOC_014193 CR936278.1 non-coding upstream 1255415 36203078 ~ 36203195 (+)
XLOC_014208 NA non-coding downstream 445290 37937807 ~ 37948286 (+)
XLOC_014209 NA non-coding downstream 525082 38017599 ~ 38020095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000054_04463229_04486856 DLGAP3 coding CI01000054 null 4462888 ~ 4486856 (-)
bowfin (Amia calva) AMCG00011084 dlgap3,LOC106933674,LOC106958363 misc CM030133.1 CM030133.1 9601377 ~ 9619279 (-)