XLOC_014199 (pef1)


Basic Information

Item Value
gene id XLOC_014199
gene name pef1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 37120491 ~ 37134211 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00028245
GCTAAAGATTTTTCGCGGAATGAGTTATCAATACGGACAGGGTTATTCGGGACCAGGGGGTAATGCTCCCCAGTGGCAGCAGCCTCCAAGGGCACCATATGCAGGTGGTCCTGCTGCTGGACAGTATGGTTCACCTTATGGCAGTGCCCCTCCAGGGCAACAGTATGGAGGAGGGTCTCCATATGGATCTTATGGTCAACCTGGTCCAAGAGCACCATACGGAGGGGGTCAAGCTCCAGGGGGTCCATACGGAGGTTATGGACAACCTCAAGGAGGACCATACCGTCAGCAGGGATCAGCAGGTAACGTTCCACCCGGTGTGAACCCTGAAGCCTACCAGTGGTTTTCAACAGTGGATTCAGACCAGAGTGGCTACATTAATGCAAAAGAGCTGAAGCAGGCACTCATGAACTTCAACAACTCCTCTTTCAATGACGAAACCTGCATTATGATGCTCAATATGTTTGACAAGACTAAATCGGGCCGTGTGGATGTGTTTGGTTTCTCCGCATTGTGGACGTTTTTGCAGCAGTGGAGGGCAGCGTTCCAGCAGTTCGACCGTGACCGATCCGGATCAATCAACACCAATGAGATGCACCAGGCATTATCTCAGATGGGCTACAATCTGAGTCCTCAGTTCATTCAGGAGCTGGTGAACCGTTACTCTGTGCGCGGTGGGACCGGCGTTCTCCAGCTGGACCGCTTCATTCAGGTGTGTACGCAGCTCCAGAGCATGACCCAGGCCTTCAGAGAGAAAGACACCGGCATGACCGGCAACGTGAGGATGAGTTATGAAGACTTTCTATCCAGTGCCATTACCAGACTCATGTAAAACAATCCAGACGCTTgaacctgaatgaatgaatgaatgaatgaatgaatgagtggcaCCACACTTGATACCCTCAGCAGTGCCTTTCTGAGCTAAAAACTGTGTTCATATAACTTTGCCAATTAGCTTAGCATGTAACTAGAACTTATTGCAAGAGATGACTGTTATCATCTGCTTAAGGCAGATCTAATACAGTAATTCAAGACTAAACTATTGCCAAAAATGTCAGTGGTGCATGTGAATAAAATGCCATTAGCTATGCAGCAAGCACTGTTTACTAATTAATCAGAGTTTGTCTTGAAAGTAtgaaaattttaattttctttttgttatAATGAATATTtctgtactttttaaatattatgcaaaatcataaaaattaatattaatgctTGAAAGGCAGCTTTGCTTAGCTTTACCTTTCCAAAGCTTCTTATTTATGTATATTCTCGTCCCCCTTCCatatattgattttgttttgtcttaATGTTTTTGcttctaattaaaataaaataaaatgaattaatttcttgtatttgtttattcgtgaggtttttattttttgttgtattttttaatttttgtttatttttgaaataaaaaagtatatgttTTAAA

Function

symbol description
pef1 Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be involved in COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to be located in cytoplasmic vesicle; endoplasmic reticulum; and membrane. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1).

GO:

id name namespace
GO:0048208 COPII vesicle coating biological_process
GO:0014029 neural crest formation biological_process
GO:0014032 neural crest cell development biological_process
GO:1902527 positive regulation of protein monoubiquitination biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:1990756 ubiquitin ligase-substrate adaptor activity molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-040801-259 Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be involved in COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to be located in cytoplasmic vesicle; endoplasmic reticulum; and membrane. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1).

Ensembl:

ensembl_id ENSDARG00000023989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00028245 True 1450 mRNA 0.42 5 37120491 37134211

Neighbor

gene id symbol gene type direction distance location
XLOC_014198 cx30.9 coding upstream 600 37118547 ~ 37119891 (+)
XLOC_014197 CABZ01036526.1 coding upstream 440284 36680091 ~ 36680207 (+)
XLOC_014196 NA coding upstream 492857 36625129 ~ 36627634 (+)
XLOC_014195 NA coding upstream 540653 36578914 ~ 36579838 (+)
XLOC_014194 AL732499.1 coding upstream 877583 36242791 ~ 36242908 (+)
XLOC_014200 smim12 coding downstream 1489 37135700 ~ 37139452 (+)
XLOC_014201 dlgap3 coding downstream 324399 37458610 ~ 37492517 (+)
XLOC_014202 NA coding downstream 360108 37494319 ~ 37498679 (+)
XLOC_014203 si:ch211-250g4.3 coding downstream 375427 37509638 ~ 37519610 (+)
XLOC_014204 NA coding downstream 435450 37569661 ~ 37570676 (+)
XLOC_014193 CR936278.1 non-coding upstream 917296 36203078 ~ 36203195 (+)
XLOC_014206 CR627498.1 non-coding downstream 535449 37669660 ~ 37669774 (+)
XLOC_014208 NA non-coding downstream 803596 37937807 ~ 37948286 (+)
XLOC_014209 NA non-coding downstream 883388 38017599 ~ 38020095 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location