XLOC_014196


Basic Information

Item Value
gene id XLOC_014196
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 36625129 ~ 36627634 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030007
TGATATTTTTGATTCTACTGGATTGTTTAAATTGAATGTACTTAACAGAGCTTATTTTAGTCTGTTGTCAAAGGAGTGATGTGCAAGGGGAAATGTGATTGGCTCTTTGTCTTTGGGCTGACGTCACTGGTGAACAGCGTGAGCGCGCATTTTGTAATGGCTGCTGATCACTGTGAGTACGATTTCATACTTTTGTCTCAAACAATCCACATTGTTTTCCATTAATAAACAAAGTATGTAACCGTTAGCAAGAAAACCACATGTAAGATTAAACTGTGTCTAACGTTAGGATGTTATTGTTCCTGTCAATCGCAACCGCCATTGCCACATTTATATACAGCTCTAAGACGTAAAAAGTGCAAAGACGTGCGTAATGGGATCGTAATATCGatcatatattatgtaaaaaaaagttaatgtaagtTTTGCCTGTGTTAGCGTGTTCATTTATGCCACGTTATAACCGTTTGGGGCCGCCGCATTTCACCTATATAACTAACGTTACAGTTCCTGTACGTGAAAACATGCTTTATGAGGTCGTCACATATAAAGTTTAATGCTGTATTCGATGAGGCATCCGCGTTATCTGTTgtgtaaaatgattattttttgcaGTGGTGGTTATGTATCGTCAGATGTTTAGCATAACATTAACCTGAGCTGTTTTtaacgttttgttttttttgtaagtaAAGTATTAACAGACTAGAATACATTGAGATTTGCCCCTTTCTTCGGAAATACGAATTCATGTTAGTTGGCAGTTTTCTAAAGATATGGAACCTCGTGCTCCTCAGTCTTAGCAAGTAAATTTTCAGATAAATAGAATGACAAgctacataaataattaattgtagcTTTATATAGTTATTTTGGTTAACAATAGCTGTCTGTGGGAAATTTGGAGATAACAgatcaaaatatgtaaatatgttttgtCAGCTAGTAATctaatgtatatttttgtgaCTGTAGATTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTAAGTATTGCTCATTTGCTTGTGACAAAATATGGTACTTATTAAAACATTGCAGATTTAAACATGGGAGCTATGCAAGACGCCAGCCATTTCCATGCATATATCATGAATGTATTTGTAATGAAATGAGTACAGTATTGATACACATGATAACATGCTAGTTtgacagttgtttaattttgacatttctctgatgttaatgaattttttttgtgtgttttactaCTACAGGTGTATCAAGAATTCAACCATATAGTTAGTAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCTGGTCACAGAGAGGTCTCACTGGACAGATTTCTATCTTCTACAAGCTGTCAAGGTTTGTGTATGCCATTGTTTGTACATGCCATTGATATAAATTGATGCCATTGTGTGCTGAATTTTGAAATTGATATAATTACTTTAGAAACCCTCAGTAACAAAGACTAAATTATGATACATGAAAATGCCCTCTCTCATGTTGACAAATGATATAATGTTGTTTCTCTGCAACAGCTCAGGCCTCTGACCTTACTGACATGCGATGTGTTGTCATTTGAGTGCTTCCAGTAGTTCTGATGACCCAACAGTTCTTCAAAGCATGTTTTGTAAGTATCATTAATAAAATCTTTAGTAATTTAATTATATCAAATCTTTTTATGCCGTATGCAATGACttgtatacaaaaaaaataatgtaatattttgtagtattttcatataTCATTATATACTAGATATATTTGGGTATACAGTTAACAAATTATGCTTGCATACaactaaaaaacattaaatacaattcatatatattaaaatcaaatgtaCACCTCTAAGatatatttatgttatctatttatTGTTGTCAGGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCGAGAAAATTACGATGTGGCTCTGCAACCCGTCCTTCCACCTCCACCCATCCTCTGTGGGAATCATCTTGGAGGAAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACAGCACCTAGGCTACACAAAATGCAAGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGACGCTGAAGGGTAAGATTCTGGCTTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAActgtgagttaaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTACAATGTAATAATATCTTGTGGTTGTTTATtatttggatatgtttgtaaaaatgtatttaaatattttaaacaagtgttttaataagatttataacaataaatattaacaatCTGTTATACAAGGCATTTTCTTGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaatcaagTGTAAAG
>TCONS_00028241
GCATTTTGTAATGGCTGCTGATCACTATTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAAGAATTCAACCATATAGTTAGTAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCTGGTCACAGAGAGGTCTCACTGGACAGATTTCTATCTTCTACAAGCTGTCAAGGCCTCTGACCTTACTGACATGCGATGTGTTGTCATTTGAGTGCTTCCAGTAGTTCTGATGACCCAACAGTTCTTCAAAGCATGTTTTGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCGAGAAAATTACGATGTGGCTCTGCAACCCGTCCTTCCACCTCCACCCATCCTCTGTGGGAATCATCTTGGAGGAAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACAGCACCTAGGCTACACAAAATGCAAGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGACGCTGAAGGGTAAGATTCTGGCTTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAActgtgagttaaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTACAATGTAATAATATCTTGTGGTTGTTTATtatttggatatgtttgtaaaaatgtatttaaatattttaaacaagtgttttaataagatttataacaataaatattaacaatCTGTTATACAAGGCATTTTCTTGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaatcaagTGTAAAG
>TCONS_00028242
TGCTGTATTCGATGAGGCATCCGCGTTATCTGTTgtgtaaaatgattattttttgcaGTGGTGGTTATGTATCGTCAGATGTTTAGCATAACATTAACCTGAGCTGTTTTtaacgttttgttttttttgtaagtaAAGTATTAACAGACTAGAATACATTGAGATTTGCCCCTTTCTTCGGAAATACGAATTCATGTTAGTTGGCAGTTTTCTAAAGATATGGAACCTCGTGCTCCTCAGTCTTAGCAAGTAAATTTTCAGATAAATAGAATGACAAgctacataaataattaattgtagcTTTATATAGTTATTTTGGTTAACAATAGCTGTCTGTGGGAAATTTGGAGATAACAgatcaaaatatgtaaatatgttttgtCAGCTAGTAATctaatgtatatttttgtgaCTGTAGATTCCAGAAAGGTCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAAGAATTCAACCATATAGTTAGTAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCAGATCTTCTGGTCACAGAGAGGTCTCACTGGACAGATTTCTATCTTCTACAAGCTGTCAAGGTTTGTGTATGCCATTGTTTGTACATGCCATTGATATAAATTGATGCCATTGTGTGCTGAATTTTGAAATTGATATAATTACTTTAGAAACCCTCAGTAACAAAGACTAAATTATGATACATGAAAATGCCCTCTCTCATGTTGACAAATGATATAATGTTGTTTCTCTGCAACAGCTCAGGCCTCTGACCTTACTGACATGCGATGTGTTGTCATTTGAGTGCTTCCAGTAGTTCTGATGACCCAACAGTTCTTCAAAGCATGTTTTGTAAGTATCATTAATAAAATCTTTAGTAATTTAATTATATCAAATCTTTTTATGCCGTATGCAATGACttgtatacaaaaaaaataatgtaatattttgtagtattttcatataTCATTATATACTAGATATATTTGGGTATACAGTTAACAAATTATGCTTGCATACaactaaaaaacattaaatacaattcatatatattaaaatcaaatgtaCACCTCTAAGatatatttatgttatctatttatTGTTGTCAGGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCGAGAAAATTACGATGTGGCTCTGCAACCCGTCCTTCCACCTCCACCCATCCTCTGTGGGAATCATCTTGGAGGAAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCATGTGTCTTTTTGGATCAACCTATGCACAGCACCTAGGCTACACAAAATGCAAGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGACGCTGAAGGGTAAGATTCTGGCTTGTCATGTAAACTGGTACAAAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAActgtgagttaaaaaaaacttaaaactatgCCTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTACAATGTAATAATATCTTGTGGTTGTTTATtatttggatatgtttgtaaaaatgtatttaaatattttaaacaagtgttttaataagatttataacaataaatattaacaatCTGTTATACAAGGCATTTTCTTGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaatcaagTGTAAAG

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0031369 translation initiation factor binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030007 False 2506 lncRNA 0.34 1 36625129 36627634
TCONS_00028241 False 888 lncRNA 0.37 5 36625275 36627634
TCONS_00028242 True 1718 lncRNA 0.33 2 36625686 36627634

Neighbor

gene id symbol gene type direction distance location
XLOC_014195 NA coding upstream 45291 36578914 ~ 36579838 (+)
XLOC_014194 AL732499.1 coding upstream 382221 36242791 ~ 36242908 (+)
XLOC_014193 CR936278.1 coding upstream 421934 36203078 ~ 36203195 (+)
XLOC_014192 NA coding upstream 509288 36110942 ~ 36115841 (+)
XLOC_014191 NA coding upstream 606175 35863209 ~ 36018954 (+)
XLOC_014197 CABZ01036526.1 coding downstream 52457 36680091 ~ 36680207 (+)
XLOC_014198 cx30.9 coding downstream 490913 37118547 ~ 37119891 (+)
XLOC_014199 pef1 coding downstream 492857 37120491 ~ 37134211 (+)
XLOC_014200 smim12 coding downstream 508066 37135700 ~ 37139452 (+)
XLOC_014201 dlgap3 coding downstream 830976 37458610 ~ 37492517 (+)
XLOC_014202 NA non-coding downstream 866685 37494319 ~ 37498679 (+)
XLOC_014204 NA non-coding downstream 942027 37569661 ~ 37570676 (+)
XLOC_014206 CR627498.1 non-coding downstream 1042026 37669660 ~ 37669774 (+)
XLOC_014208 NA non-coding downstream 1310173 37937807 ~ 37948286 (+)

Expression


Co-expression Network