XLOC_014202


Basic Information

Item Value
gene id XLOC_014202
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 37494319 ~ 37498679 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030008
aagtgattttatgttttagaatagaattagtaatgttctcaataatatctgtaaaggaaacacaggccctatatgtgccattaacatacatttcaattaatatgTAAAACGAGTGAATGATTTAACCAAAACTGATATTGGattttatgttaaatacttgtttgtataaaacaatataatttgcacgagggaattatggggttcttctctaaagaagtttttACTACCCTGttaagagcatcattatgggagttttacgttataactaacatggttcaaacgatggatctgcgaaaGTGAAACTaagggttttgggaaacactcatcactacatcgttcttttcccaaacgatgcatcgtactatgatagttcagccgcgtgTTACGTCGTTGTttaggaaacgcacccctggttagTAGTCTCTagaagtcttgaacaccttgattagttggatcagatgtgcttgattagagttggagaacaactgtgcagagctgcggccctccaggaatggggtatatgcacactgacttttaatttcagtcagctaGCCCCGGGGCTTCtagttaattgtcatcccatacaaaatcgccTTGtctaagatctgatttctttcaaaaaaaaaaaaacagtaatcttccctgcctggctgagatacaatgtaaagtgggtctcagaccaaacAAATAGTATTCGATTTATTTATTCGATCCATGTCTTTGAAAAATggaaattaattagttaattaattaattacctcAATATTTTCTCAGAGTttttgcgctagcctgctgctaatgaagGCACCTTTATTTAAACAGTCTTTCGTCTCTTTTTACGATTTACCAAAaaaaatggatgcttaagtctatttaattgattatttttgaaTTATATCACAAAATTGATgctttaaaaggaaccttacGAAATtgacaaaggctcattctgaaaaaaaagcccaataaacatttctggagatggtGAATTCTTTAGCCAGAATTAAGTATGGctgcactacatttttttaaatgaacagggtggtatgacgcctTTCCTTTTCTCTTACCTCTGTATAGACGGCTTTCTGGCTGTTACCAGtatgtccagttagctcaccatgtacgtcgctagacttcagatgcagagaggagttgaccatgacaacgcAGTATGATTCCGGTGAAGAACGATTTTAGAAAGTGGgtcagaccaaaaaaaaaaaaaaaaaaatcagccctTGCAAAAAATCAGgcaagagcttttctttttctgaattgctttttaaaatttgtcGGTTGAGTTTAGGCGAGGAGGAGGCTGGGTCAGTCGattgatcagtcagtcattcagtcagtcaaacagtcagtcgacagcggcctctggtggattcgcgaaaaacaaaaactgcaaaaaaacaaaagtcctgggacgtatttagcactctccagaaatgtatgcacacaggtacgttttcagaatgcaCCTGGGttaaaaattgaaaatagtcacataaagctttcaccagaggtttatcattggctgaaaaacactagctgtgcatataacccactGAGTTTGAGATTTGTGTTATACCGTCAGTTAACTATTTATAAAGAAAATGTGTTAGATTAGGTGGTCAAGTTTTCTGTATTCATCAAAAGGAAGCATTAACATATAATTATGGGATTGGAGGAATGTTTGTGTGCATCCAACTTTTAACTTGGATGAATTCAAACTATAAAGAAGCATTCTTACAAACTCTCGAGATcatattttcttttccttttttttttttttttttgtttttaagtaaaaCATTTTGATTGCATGAACGAGTTTGTTTTGTTCTGGGTATGTTTAACCATGAAATGAGATGGGAAATATTTTATTGAGAGATGTATATTTTATAAAGTACATTTTTAGATTAGCAGATGAACATATGTTGTCAAAAGTggtgttaaaacatgttataaaaGTGTCTAAGAATTTACAATTTAGGCAGTGTCAGCTGTGTGGACTTAACCGAAGACTTCACCTCTGCAGAAGCGTGTTCCTCTCATTTTTTTTGTCGATCTTGAAACAGACTGGCTAAAGACTTTTGACAAAAAAGACGGTTGATAGCCGCTTGCCATGTTGTCCACAGGCAAAAAATATAACCTGTTTTCTATGTCTTGACTATTTACACGTGCCTAACAGCACTAAGTGTGGCTTTTTTATCTAACCATTCAGTATTATATTCAATATGAGATATATAACTCACAAAATAtgtattgttcaaactatttgaTTTGTTACAGCTAATAACCACCTCACTCTGGATGTTTCTATGTAACCTGCATGCTTTTATTAATCcatggaagaagaaaaaaactataaaagCCGTAGATCTTTATTCCctgtctgaaagaaaaaaaagcAAGTCTAAGATGACCGAAAAGCACAACAGACTATTTCCTCTTCCACTGTGAAGGACTTCCTGCCTTCTCAAATCACTGAAAGACTATGAACTACATGCTGTTGGAGGTTCCAGTGTGGAAAAATAGGATGATCTCTTATCAGGGCCATTTGATTTTGATATACCAACGAAACATCAAGCAAGACTGATCACATTTTTCCCCACCAAGTTGCTTGCCTTCTCGGGCACATACCAGAAATAAGACACTCAAATGAACTATTTTGATGGCCTTTCTATCTTGACCAACATTTTCCAGAATATTGAAGGATCAAATACAATATTAATGGCTGTGTCTCTACATCATGTAAAGATTCCCTTGTCAACATGTCGCTTATTGAGACATTTCGTGTCTGAATAGGTAGGAATGGATGGCGAAACACTTGCTTTGAAAACTGGAGTCTTAAAAAAGTGTTGGCGAAGCCTCTGTATATGCCGTACACAGTTTTAGCTAgactaaattataaatatttctccGTAGCACAAAGGAGCTTGTAGCAGTGTGACGTAGACTTTACGTTGGTTTCTATACCACATTATTGATCACTGGAAATTACATGGGTCATAGACTTACAAACAATTACTGTGTAATTACAAATACCTTCTCACGTTCCGTTGTATTATGTACAGTAAATATATCTtgaagttgttattattaatattcaatgGATTGTTATGACGATTACTGGTATTATTAATGATTTCATATATAAtggagaagaaaaaaagtgttgccATTATGATTATGAGAAGTCTGTATTCTCCAGGGTGTTTGTGTGTAAAGAGCCACCCGATTTAGATCTATTCTTTTGTTCGTAATTGCTGCTAATGTAGAAGATATACCAGTGGAAGACGGTAGAAGACAAATTTACAGCTAATGTTAGGCCCATCTCCTCTAGAAGTTGTGTGCAGATTTTCACATGACAGAAAACGTCCAATGAACAACAAGGAGTGAGTATATGTCcctctttaaatagaaaaatatatatgtttataaatgtttgaGCAGTTTGTGATGTAGCAAAAACCTTTTTTGTTCTTTAAATGTTCATTAAGTTGCTCATAACACTGCATTTTAGGAACATTGtggacattttaattattaacgtTATCACTGTTTATGGTTGttgtattttttctttgcttGTTTTTCTAATCACATATTTATGTTTGATACAGTGCCAAGGTATTTTGTATCTAtgctttttacattgttttaccaAACTGCAATAGCTTACGACATCTTCACCATTTTCAATATTATTTCCAGATTTGAAATAAATCTGAATCTCTTGCCAGTTTGTTGAAACAAAAGGATGCAAGCCTTATAAATAATAATGGCACAGATGAAGCATACGTTGATCATGTTTATTTGGTCTCTCGCCACTGATGTACAGCTCAATGTCTACTAGAATTAAATCAGAGAGATGGCACACTGTGATGTGGTAAACCTAAACACAGAATGTAATATTGTCAACGGTTgtaaacattttctaaaaattaCTATAAAGCTATTTTAGCAAGGTACAATAACTGCTGTCCGCTTTTAGTGTTCTGTTCTGCTCCTTTTCTTAACAATACGTTCATTAATTGAACTCTGTGTTTTCCATTaaccttttgaaaaacaaaatgtccTCACAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0006887 exocytosis biological_process
GO:0099643 signal release from synapse biological_process
GO:0050877 nervous system process biological_process
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0048513 animal organ development biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0045161 neuronal ion channel clustering biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0045162 clustering of voltage-gated sodium channels biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0007275 multicellular organism development biological_process
GO:0032940 secretion by cell biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0140029 exocytic process biological_process
GO:0046903 secretion biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0048284 organelle fusion biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0042551 neuron maturation biological_process
GO:0099500 vesicle fusion to plasma membrane biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0031629 synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0048880 sensory system development biological_process
GO:0023061 signal release biological_process
GO:0061024 membrane organization biological_process
GO:0061025 membrane fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0090174 organelle membrane fusion biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0001654 eye development biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process
GO:0051650 establishment of vesicle localization biological_process
GO:0016050 vesicle organization biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0043005 neuron projection cellular_component
GO:0044433 obsolete cytoplasmic vesicle part cellular_component
GO:0048786 presynaptic active zone cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0045202 synapse cellular_component
GO:0012506 vesicle membrane cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097708 intracellular vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0031201 SNARE complex cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0017075 syntaxin-1 binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030008 True 4097 lncRNA 0.35 2 37494319 37498679

Neighbor

gene id symbol gene type direction distance location
XLOC_014201 dlgap3 coding upstream 1802 37458610 ~ 37492517 (+)
XLOC_014200 smim12 coding upstream 354867 37135700 ~ 37139452 (+)
XLOC_014199 pef1 coding upstream 360108 37120491 ~ 37134211 (+)
XLOC_014198 cx30.9 coding upstream 374428 37118547 ~ 37119891 (+)
XLOC_014197 CABZ01036526.1 coding upstream 814112 36680091 ~ 36680207 (+)
XLOC_014203 si:ch211-250g4.3 coding downstream 10959 37509638 ~ 37519610 (+)
XLOC_014204 NA coding downstream 70982 37569661 ~ 37570676 (+)
XLOC_014205 thsd7aa coding downstream 121663 37620342 ~ 37842003 (+)
XLOC_014206 CR627498.1 coding downstream 170981 37669660 ~ 37669774 (+)
XLOC_014207 nxph1 coding downstream 350151 37848830 ~ 37928041 (+)
XLOC_014196 NA non-coding upstream 866685 36625129 ~ 36627634 (+)
XLOC_014195 NA non-coding upstream 914481 36578914 ~ 36579838 (+)
XLOC_014194 AL732499.1 non-coding upstream 1251411 36242791 ~ 36242908 (+)
XLOC_014193 CR936278.1 non-coding upstream 1291124 36203078 ~ 36203195 (+)
XLOC_014208 NA non-coding downstream 439128 37937807 ~ 37948286 (+)
XLOC_014209 NA non-coding downstream 518920 38017599 ~ 38020095 (+)
XLOC_014211 BX530058.2 non-coding downstream 757597 38256276 ~ 38256392 (+)

Expression


Co-expression Network